Ppi_g40052 (RPA70B, ATRPA70B)

Aliases : RPA70B, ATRPA70B

Description : component *(RPA1) of RPA presynaptic filament assembly factor complex & original description: none

Gene families : OG0003997 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003997_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ppi_g40052
Cluster	HCCA: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00154p00046110	RPA70B,...	Cell cycle.mitosis and meiosis.meiotic recombination.DNA...	0.08	OrthoFinder output from all 47 species
AT5G08020	RPA70B, ATRPA70B	RPA70-kDa subunit B	0.09	OrthoFinder output from all 47 species
AT5G61000	RPA70D, ATRPA70D	Replication factor-A protein 1-related	0.07	OrthoFinder output from all 47 species
Ala_g25088	RPA70D, ATRPA70D	component *(RPA1) of RPA presynaptic filament assembly...	0.07	OrthoFinder output from all 47 species
Als_g07217	RPA70D, ATRPA70D	component *(RPA1) of RPA presynaptic filament assembly...	0.06	OrthoFinder output from all 47 species
Als_g08320	RPA70D, ATRPA70D	component *(RPA1) of RPA presynaptic filament assembly...	0.08	OrthoFinder output from all 47 species
Aop_g21131	RPA70B, ATRPA70B	component *(RPA1) of RPA presynaptic filament assembly...	0.07	OrthoFinder output from all 47 species
Aspi01Gene25029.t1	RPA70D,...	component *(RPA1) of RPA presynaptic filament assembly...	0.05	OrthoFinder output from all 47 species
Aspi01Gene32891.t1	RPA70B,...	component *(RPA1) of RPA presynaptic filament assembly...	0.08	OrthoFinder output from all 47 species
Azfi_s0093.g043249	RPA70D, ATRPA70D	component *(RPA1) of RPA presynaptic filament assembly...	0.03	OrthoFinder output from all 47 species
Ceric.18G083500.1	RPA70B,...	component *(RPA1) of RPA presynaptic filament assembly...	0.09	OrthoFinder output from all 47 species
Cre16.g651000	RPA70D, ATRPA70D	Cell cycle.mitosis and meiosis.meiotic recombination.DNA...	0.04	OrthoFinder output from all 47 species
Dac_g20470	RPA70D, ATRPA70D	component *(RPA1) of RPA presynaptic filament assembly...	0.11	OrthoFinder output from all 47 species
Dcu_g11388	RPA70D, ATRPA70D	component *(RPA1) of RPA presynaptic filament assembly...	0.1	OrthoFinder output from all 47 species
GSVIVT01007849001	RPA70B, ATRPA70B	Cell cycle.mitosis and meiosis.meiotic recombination.DNA...	0.04	OrthoFinder output from all 47 species
GSVIVT01037062001	RPA70D, ATRPA70D	Replication protein A 70 kDa DNA-binding subunit D...	0.01	OrthoFinder output from all 47 species
Gb_17349	RPA70B, ATRPA70B	component RPA1 of single-stranded-DNA binding RPA...	0.08	OrthoFinder output from all 47 species
LOC_Os03g11540.1	RPA70B,...	component RPA1 of single-stranded-DNA binding RPA...	0.11	OrthoFinder output from all 47 species
Len_g04778	RPA70D, ATRPA70D	component *(RPA1) of RPA presynaptic filament assembly...	0.08	OrthoFinder output from all 47 species
Len_g48997	RPA70D, ATRPA70D	component *(RPA1) of RPA presynaptic filament assembly...	0.03	OrthoFinder output from all 47 species
Lfl_g30854	RPA70B, ATRPA70B	component *(RPA1) of RPA presynaptic filament assembly...	0.09	OrthoFinder output from all 47 species
MA_10308567g0040	RPA70B, ATRPA70B	Replication protein A 70 kDa DNA-binding subunit B...	0.03	OrthoFinder output from all 47 species
MA_10327014g0020	RPA70B, ATRPA70B	component RPA1 of RPA presynaptic filament assembly...	0.03	OrthoFinder output from all 47 species
MA_10331305g0010	RPA70B, ATRPA70B	component RPA1 of RPA presynaptic filament assembly...	0.05	OrthoFinder output from all 47 species
MA_10356314g0010	No alias	Replication protein A 70 kDa DNA-binding subunit B...	0.03	OrthoFinder output from all 47 species
Mp2g17030.1	RPA70D, ATRPA70D	component RPA1 of single-stranded-DNA binding RPA...	0.09	OrthoFinder output from all 47 species
Msp_g06104	RPA70B, ATRPA70B	component *(RPA1) of RPA presynaptic filament assembly...	0.12	OrthoFinder output from all 47 species
Nbi_g08948	RPA70B, ATRPA70B	component *(RPA1) of RPA presynaptic filament assembly...	0.12	OrthoFinder output from all 47 species
Solyc03g115050.3.1	RPA70B,...	component RPA1 of single-stranded-DNA binding RPA...	0.07	OrthoFinder output from all 47 species
Spa_g41654	RPA70D, ATRPA70D	component *(RPA1) of RPA presynaptic filament assembly...	0.1	OrthoFinder output from all 47 species
Tin_g07108	RPA70D, ATRPA70D	component *(RPA1) of RPA presynaptic filament assembly...	0.11	OrthoFinder output from all 47 species
Zm00001e000841_P002	RPA70B,...	component RPA1 of single-stranded-DNA binding RPA...	0.06	OrthoFinder output from all 47 species
Zm00001e038720_P001	RPA70B,...	component RPA1 of single-stranded-DNA binding RPA...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006269	DNA replication, synthesis of RNA primer	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006820	monoatomic anion transport	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0015095	magnesium ion transmembrane transporter activity	IEP	HCCA
BP	GO:0015693	magnesium ion transport	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016409	palmitoyltransferase activity	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
BP	GO:0032392	DNA geometric change	IEP	HCCA
BP	GO:0032508	DNA duplex unwinding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
MF	GO:0050664	oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004365	NA-bd_OB_tRNA	179	262
IPR007199	Rep_factor-A_N	4	96
IPR013955	Rep_factor-A_C	456	603
IPR031657	REPA_OB_2	297	393

External Links

No external refs found!

Ppi_g40052 (RPA70B, ATRPA70B)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation