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  5. Ppi_g38667

Ppi_g38667


Description : component *(eL6) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001317 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001317_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g38667
Cluster HCCA: Cluster_385

Target Alias Description ECC score Gene Family Method Actions
AT1G18540 No alias Ribosomal protein L6 family protein 0.03 OrthoFinder output from all 47 species
Adi_g103996 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021127.127 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Cre01.g011000 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Dac_g09331 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Gb_01604 No alias component RPL6 of LSU proteome component 0.02 OrthoFinder output from all 47 species
LOC_Os02g37862.1 LOC_Os02g37862 component RPL6 of LSU proteome component 0.03 OrthoFinder output from all 47 species
LOC_Os04g39700.1 LOC_Os04g39700 component RPL6 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Mp3g11670.1 No alias component RPL6 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Pp3c1_24300V3.1 Pp3c1_24300 Ribosomal protein L6 family protein 0.01 OrthoFinder output from all 47 species
Sam_g06914 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g26138 No alias component *(eL6) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e014979_P001 Zm00001e014979 component RPL6 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Zm00001e022840_P001 Zm00001e022840 component RPL6 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Zm00001e022841_P001 Zm00001e022841 component RPL6 of LSU proteome component 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005750 mitochondrial respiratory chain complex III IEP HCCA
BP GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c IEP HCCA
BP GO:0009060 aerobic respiration IEP HCCA
BP GO:0015980 energy derivation by oxidation of organic compounds IEP HCCA
BP GO:0019646 aerobic electron transport chain IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0022904 respiratory electron transport chain IEP HCCA
BP GO:0032780 negative regulation of ATP-dependent activity IEP HCCA
MF GO:0033218 amide binding IEP HCCA
MF GO:0042030 ATPase inhibitor activity IEP HCCA
BP GO:0043462 regulation of ATP-dependent activity IEP HCCA
BP GO:0044092 negative regulation of molecular function IEP HCCA
CC GO:0045275 respiratory chain complex III IEP HCCA
BP GO:0045333 cellular respiration IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
CC GO:0098803 respiratory chain complex IEP HCCA
MF GO:0120227 acyl-CoA binding IEP HCCA
MF GO:1901567 fatty acid derivative binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
CC GO:1902495 transmembrane transporter complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
CC GO:1990351 transporter complex IEP HCCA
InterPro domains Description Start Stop
IPR000915 60S_ribosomal_L6E 99 205
No external refs found!