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  5. LOC_Os11g43890.1

LOC_Os11g43890.1


Description : component VIP3 of PAF1C transcription initiation and elongation complex. component SKI8 of SUPERKILLER (SKI) regulation complex


Gene families : OG_01_0006437 (Archaeplastida) Phylogenetic Tree(s): OG_01_0006437_tree ,
OG_02_0008566 (LandPlants) Phylogenetic Tree(s): OG_02_0008566_tree ,
OG_03_0009435 (SeedPlants) Phylogenetic Tree(s): OG_03_0009435_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os11g43890.1
Cluster HCCA: Cluster_353

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00196050 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.associated... 0.04 Archaeplastida
GSVIVT01015149001 No alias RNA processing.RNA decay.exosome complex.associated... 0.03 Archaeplastida
AMTR_s00003p00196050 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.associated... 0.03 LandPlants
GSVIVT01015149001 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 LandPlants
AMTR_s00003p00196050 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.associated... 0.03 SeedPlants
GSVIVT01015149001 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR024977 Apc4_WD40_dom 157 209
IPR001680 WD40_repeat 238 273
IPR001680 WD40_repeat 98 134
No external refs found!