LOC_Os11g37080.1


Description : core component Gar1 of H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex


Gene families : OG_01_0005231 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005231_tree ,
OG_02_0006383 (LandPlants) Phylogenetic Tree(s): OG_02_0006383_tree ,
OG_03_0009370 (SeedPlants) Phylogenetic Tree(s): OG_03_0009370_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os11g37080.1
Cluster HCCA: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
AT3G03920 No alias H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.22 Archaeplastida
Cpa|evm.model.tig00000310.30 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.03 Archaeplastida
GSVIVT01033401001 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.09 Archaeplastida
Gb_24533 No alias core component Gar1 of H/ACA small nucleolar... 0.03 Archaeplastida
Mp5g08210.1 No alias core component Gar1 of H/ACA small nucleolar... 0.04 Archaeplastida
Pp3c25_15020V3.1 No alias H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.03 Archaeplastida
Pp3c5_28430V3.1 No alias H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.12 Archaeplastida
Smo266974 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.05 Archaeplastida
Solyc10g078540.3.1 No alias core component Gar1 of H/ACA small nucleolar... 0.15 Archaeplastida
Zm00001e011244_P001 No alias core component Gar1 of H/ACA small nucleolar... 0.04 Archaeplastida
Zm00001e024449_P002 No alias core component Gar1 of H/ACA small nucleolar... 0.04 Archaeplastida
AT3G03920 No alias H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.2 LandPlants
GSVIVT01033401001 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.09 LandPlants
Mp5g08210.1 No alias core component Gar1 of H/ACA small nucleolar... 0.03 LandPlants
Pp3c25_15020V3.1 No alias H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.03 LandPlants
Pp3c5_28430V3.1 No alias H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.1 LandPlants
Smo266974 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.05 LandPlants
Solyc10g078540.3.1 No alias core component Gar1 of H/ACA small nucleolar... 0.15 LandPlants
Zm00001e011244_P001 No alias core component Gar1 of H/ACA small nucleolar... 0.04 LandPlants
Zm00001e024449_P002 No alias core component Gar1 of H/ACA small nucleolar... 0.04 LandPlants
AT3G03920 No alias H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.2 SeedPlants
GSVIVT01033401001 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.09 SeedPlants
Solyc10g078540.3.1 No alias core component Gar1 of H/ACA small nucleolar... 0.15 SeedPlants
Zm00001e024449_P002 No alias core component Gar1 of H/ACA small nucleolar... 0.04 SeedPlants

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
BP GO:0042254 ribosome biogenesis IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007504 H/ACA_rnp_Gar1/Naf1 44 144
No external refs found!