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  5. Aev_g11144

Aev_g11144 (CTS, ACN2, PED3, AtABCD1, PXA1)


Aliases : CTS, ACN2, PED3, AtABCD1, PXA1

Description : subfamily ABCD transporter & original description: none


Gene families : OG0003180 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003180_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g11144

Target Alias Description ECC score Gene Family Method Actions
AT4G39850 CTS, ACN2, PED3,... peroxisomal ABC transporter 1 0.04 OrthoFinder output from all 47 species
Adi_g020091 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: none 0.05 OrthoFinder output from all 47 species
Als_g30641 CTS, ACN2, PED3,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene62794.t1 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G050100.1 CTS, ACN2, PED3,... subfamily ABCD transporter & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g08997 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: none 0.05 OrthoFinder output from all 47 species
Len_g16771 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g02451 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: none 0.04 OrthoFinder output from all 47 species
MA_10435403g0010 CTS, ACN2, PED3,... peroxisomal fatty acid transporter (PXA1). subfamily... 0.02 OrthoFinder output from all 47 species
MA_10437109g0020 CTS, ACN2, PED3,... ABC transporter D family member 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_10437109g0030 CTS, ACN2, PED3,... subfamily ABCD transporter 0.03 OrthoFinder output from all 47 species
MA_526197g0010 CTS, ACN2, PED3,... ABC transporter D family member 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Mp6g16850.1 CTS, ACN2, PED3,... peroxisomal fatty acid transporter (PXA1). subfamily... 0.03 OrthoFinder output from all 47 species
Nbi_g06821 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g055120.3.1 CTS, ACN2, PED3,... peroxisomal fatty acid transporter (PXA1). subfamily... 0.07 OrthoFinder output from all 47 species
Tin_g20110 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
MF GO:0140359 ABC-type transporter activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 1135 1301
IPR003439 ABC_transporter-like_ATP-bd 467 612
IPR011527 ABC1_TM_dom 753 1018
IPR011527 ABC1_TM_dom 95 362
No external refs found!