AMTR_s00088p00026960 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00088.11

Description : RNA biosynthesis.siRNA biogenesis.RDR2 ssRNA polymerase

Gene families : OG_01_0000823 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000823_tree ,
OG_02_0002293 (LandPlants) Phylogenetic Tree(s): OG_02_0002293_tree ,
OG_03_0008689 (SeedPlants) Phylogenetic Tree(s): OG_03_0008689_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00088p00026960
Cluster	HCCA: Cluster_37

Target	Alias	Description	ECC score	Gene Family Method
AT4G11130	SMD1, RDR2	RNA-dependent RNA polymerase 2	0.03	Archaeplastida
Gb_28433	No alias	ssRNA polymerase (RDR2)	0.02	Archaeplastida
MA_467439g0010	No alias	RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana...	0.04	Archaeplastida
AT4G11130	SMD1, RDR2	RNA-dependent RNA polymerase 2	0.03	LandPlants
Gb_28433	No alias	ssRNA polymerase (RDR2)	0.02	LandPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007855	RNA-dep_RNA_pol_euk-typ	374	956

External Links

No external refs found!