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  5. Ppi_g30090

Ppi_g30090 (ATUPF3, UPF3)


Aliases : ATUPF3, UPF3

Description : component *(UPF3) of RNA quality control Exon Junction complex & original description: none


Gene families : OG0002175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002175_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Ppi_g30090

Target Alias Description ECC score Gene Family Method Actions
Ala_g05619 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Aob_g35424 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Aspi01Gene11972.t1 ATUPF3, UPF3,... component *(UPF3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Ceric.07G016200.1 ATUPF3, UPF3,... component *(UPF3) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Spa_g22612 ATUPF3, UPF3 component *(UPF3) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Zm00001e008047_P001 ATUPF3, UPF3,... component UPF3 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Zm00001e040916_P004 ATUPF3, UPF3,... component UPF3 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR005120 UPF3_dom 128 293
No external refs found!