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  5. Ppi_g29798

Ppi_g29798 (SPI)


Aliases : SPI

Description : not classified & original description: none


Gene families : OG0003198 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003198_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g29798
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AT1G03060 SPI Beige/BEACH domain ;WD domain, G-beta repeat protein 0.02 OrthoFinder output from all 47 species
Len_g08661 SPI not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp2g15880.1 SPI Protein SPIRRIG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Ore_g04811 SPI not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g065700.3.1 SPI, Solyc09g065700 Protein SPIRRIG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR023362 PH-BEACH_dom 2881 2931
IPR001680 WD40_repeat 3333 3362
IPR001680 WD40_repeat 3377 3413
IPR000409 BEACH_dom 2970 3248
No external refs found!