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Description : not classified & original description: none
Gene families : OG0001061 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001061_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00056p00043140 | ATCAF1, CAF1,... | RNA processing.organelle machineries.RNA... | 0.03 | OrthoFinder output from all 47 species | |
| AT2G20020 | ATCAF1, CAF1 | RNA-binding CRS1 / YhbY (CRM) domain-containing protein | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g015701 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g106797 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g02604 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g22094 | ATCAF1, CAF1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g34328 | ATCAF1, CAF1 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g16109 | ATCAF1, CAF1 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.04 | OrthoFinder output from all 47 species | |
| Als_g30903 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g63274 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g07417 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g13815 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g60711 | ATCAF1, CAF1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g06914 | CAF2, ATCAF2 | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Cba_g12900 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g72184 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.11G050500.1 | CAF2, ATCAF2,... | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.14G027700.1 | Ceric.14G027700 | not classified & original description: pacid=50634377... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.17G046000.1 | ATCAF1, CAF1,... | not classified & original description: pacid=50617225... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g14796 | ATCAF1, CAF1 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g14923 | ATCAF1, CAF1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g16819 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g02479 | ATCAF1, CAF1 | mCSF mitochondrial RNA splicing factor & original... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_32774 | CAF2, ATCAF2 | CRS2-associated factor 2, chloroplastic OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g21990.1 | CAF2, ATCAF2,... | component CAF of CRS2-CAF plastidial RNA splicing factor... | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g13314 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g08909 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g56937 | CAF2, ATCAF2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Solyc05g018240.4.1 | ATCAF1, CAF1,... | component CAF of CRS2-CAF plastidial RNA splicing factor... | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g31214 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g51985 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g12704 | ATCAF1, CAF1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| MF | GO:0019843 | rRNA binding | IEP | HCCA |
| MF | GO:0030246 | carbohydrate binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
| MF | GO:0051540 | metal cluster binding | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |