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  5. Ppi_g29675

Ppi_g29675 (ATKRS-1)


Aliases : ATKRS-1

Description : EC_6.1 ligase forming carbon-oxygen bond & original description: none


Gene families : OG0003653 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003653_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g29675

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00070350 ATKRS-1,... Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder output from all 47 species
AT3G11710 ATKRS-1 lysyl-tRNA synthetase 1 0.04 OrthoFinder output from all 47 species
Aev_g07226 ATKRS-1 EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
Aob_g35894 ATKRS-1 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Ceric.03G004900.1 ATKRS-1, Ceric.03G004900 EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
Dcu_g10035 ATKRS-1 EC_6.1 ligase forming carbon-oxygen bond & original... 0.04 OrthoFinder output from all 47 species
Gb_06956 ATKRS-1 lysine-tRNA ligase 0.03 OrthoFinder output from all 47 species
LOC_Os03g38980.1 ATKRS-1, LOC_Os03g38980 lysine-tRNA ligase 0.03 OrthoFinder output from all 47 species
Lfl_g05567 ATKRS-1 EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species
MA_10429295g0010 ATKRS-1 lysine-tRNA ligase 0.02 OrthoFinder output from all 47 species
MA_126835g0010 ATKRS-1 Lysine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp4g22190.1 ATKRS-1 lysine-tRNA ligase 0.03 OrthoFinder output from all 47 species
Ore_g03841 ATKRS-1 EC_6.1 ligase forming carbon-oxygen bond & original... 0.02 OrthoFinder output from all 47 species
Smo428663 ATKRS-1 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder output from all 47 species
Solyc06g073330.4.1 ATKRS-1, Solyc06g073330 lysine-tRNA ligase 0.05 OrthoFinder output from all 47 species
Spa_g26450 ATKRS-1 EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Zm00001e012475_P001 ATKRS-1, Zm00001e012475 lysine-tRNA ligase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005049 nuclear export signal receptor activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
CC GO:0030286 dynein complex IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR004364 Aa-tRNA-synt_II 253 602
IPR004365 NA-bd_OB_tRNA 130 210
No external refs found!