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  5. Ppi_g29462

Ppi_g29462


Description : NDX-type transcription factor & original description: none


Gene families : OG0003424 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003424_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g29462

Target Alias Description ECC score Gene Family Method Actions
Ala_g02709 No alias NDX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0003.g007857 No alias not classified & original description: CDS=227-2413 0.04 OrthoFinder output from all 47 species
Ceric.1Z061200.1 Ceric.1Z061200 not classified & original description: pacid=50604630... 0.02 OrthoFinder output from all 47 species
Dac_g01065 No alias NDX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14457 No alias NDX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10429256g0020 No alias transcription factor (NDX) 0.02 OrthoFinder output from all 47 species
MA_57200g0010 No alias transcription factor (NDX) 0.02 OrthoFinder output from all 47 species
Mp1g16560.1 No alias transcription factor (NDX) 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s1035.g027924 No alias NDX-type transcription factor & original description: CDS=1-4293 0.02 OrthoFinder output from all 47 species
Sam_g30227 No alias NDX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc09g074330.3.1 Solyc09g074330 transcription factor (NDX) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004014 adenosylmethionine decarboxylase activity IEP HCCA
MF GO:0004556 alpha-amylase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006576 biogenic amine metabolic process IEP HCCA
BP GO:0006595 polyamine metabolic process IEP HCCA
BP GO:0006596 polyamine biosynthetic process IEP HCCA
BP GO:0006597 spermine biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008215 spermine metabolic process IEP HCCA
BP GO:0008216 spermidine metabolic process IEP HCCA
BP GO:0008295 spermidine biosynthetic process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009309 amine biosynthetic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042401 biogenic amine biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!