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  5. Ppi_g29159

Ppi_g29159 (PRP39)


Aliases : PRP39

Description : pre-mRNA-processing protein *(PRP39) & original description: none


Gene families : OG0002297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g29159

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00179p00033790 AT PRP39-2,... No description available 0.03 OrthoFinder output from all 47 species
Adi_g114841 AT PRP39-2, PRP39-2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12647 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g37742 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene30895.t1 AT PRP39-2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene31680.t2 PRP39, Aspi01Gene31680 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g25483 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.04G096600.1 PRP39, Ceric.04G096600 pre-mRNA-processing protein *(PRP39) & original... 0.02 OrthoFinder output from all 47 species
Dac_g40489 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g15145 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g11777 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01028421001 PRP39 No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01028422001 PRP39 No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01028423001 PRP39 No description available 0.04 OrthoFinder output from all 47 species
Gb_23802 PRP39 pre-mRNA-processing protein (PRP39) 0.04 OrthoFinder output from all 47 species
LOC_Os03g11200.1 PRP39, LOC_Os03g11200 pre-mRNA-processing protein (PRP39) 0.03 OrthoFinder output from all 47 species
Lfl_g19659 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.11 OrthoFinder output from all 47 species
MA_6626g0010 PRP39 pre-mRNA-processing protein (PRP39) 0.03 OrthoFinder output from all 47 species
Mp6g00560.1 PRP39 pre-mRNA-processing protein (PRP39) 0.04 OrthoFinder output from all 47 species
Msp_g38712 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g60863 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06717 AT PRP39-2, PRP39-2 pre-mRNA-processing protein *(PRP39) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g03914 AT PRP39-2, PRP39-2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g38613 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g56288 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g19871 PRP39 pre-mRNA-processing protein *(PRP39) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e000702_P004 PRP39, Zm00001e000702 pre-mRNA-processing protein (PRP39) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004751 ribose-5-phosphate isomerase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0034511 U3 snoRNA binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR008847 Suf 2 88
No external refs found!