Ppi_g28399

Description : component *(eL19) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001435 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001435_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ppi_g28399
Cluster	HCCA: Cluster_153

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00091p00066640	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
AT1G02780	emb2386	Ribosomal protein L19e family protein	0.1	OrthoFinder output from all 47 species
Ala_g28989	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Aop_g03394	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g14682	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Azfi_s0006.g009570	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Cba_g07141	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cba_g12573	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cba_g48229	emb2386	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.07G087100.1	Ceric.07G087100	component *(eL19) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ceric.17G056200.1	Ceric.17G056200	component *(eL19) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021181.1	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	OrthoFinder output from all 47 species
Cre02.g075700	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Dcu_g35194	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Dde_g48535	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01028052001	emb2386	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
GSVIVT01035096001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder output from all 47 species
Gb_23171	emb2386	component RPL19 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Gb_23172	No alias	component RPL19 of LSU proteome component	0.05	OrthoFinder output from all 47 species
LOC_Os03g21940.1	emb2386, LOC_Os03g21940	component RPL19 of LSU proteome component	0.06	OrthoFinder output from all 47 species
LOC_Os03g38260.1	LOC_Os03g38260	component RPL19 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Len_g04088	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Lfl_g30375	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
MA_1839g0010	emb2386	component RPL19 of LSU proteome component	0.06	OrthoFinder output from all 47 species
MA_22977g0010	emb2386	component RPL19 of LSU proteome component	0.08	OrthoFinder output from all 47 species
Mp7g09050.1	No alias	component RPL19 of LSU proteome component	0.14	OrthoFinder output from all 47 species
Msp_g06900	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Msp_g18967	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c15_5130V3.1	Pp3c15_5130	Ribosomal protein L19e family protein	0.03	OrthoFinder output from all 47 species
Pp3c16_410V3.1	Pp3c16_410	Ribosomal protein L19e family protein	0.09	OrthoFinder output from all 47 species
Pp3c21_11230V3.1	Pp3c21_11230	Ribosomal protein L19e family protein	0.08	OrthoFinder output from all 47 species
Pp3c22_9980V3.1	Pp3c22_9980	Ribosomal protein L19e family protein	0.05	OrthoFinder output from all 47 species
Pp3c9_14720V3.1	Pp3c9_14720	Ribosomal protein L19e family protein	0.07	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005282	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g19648	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g25834	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g38378	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Smo179747	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Smo271656	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
Solyc06g009210.4.1	emb2386, Solyc06g009210	component RPL19 of LSU proteome component	0.08	OrthoFinder output from all 47 species
Solyc09g075430.3.1	Solyc09g075430	component RPL19 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Spa_g11535	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Spa_g11536	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Spa_g11537	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Tin_g03158	No alias	component *(eL19) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Zm00001e020524_P001	emb2386, Zm00001e020524	component RPL19 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Zm00001e025202_P001	Zm00001e025202	component RPL19 of LSU proteome component	0.09	OrthoFinder output from all 47 species
Zm00001e036280_P001	Zm00001e036280	component RPL19 of LSU proteome component	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
CC	GO:0005787	signal peptidase complex	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006448	regulation of translational elongation	IEP	HCCA
BP	GO:0006449	regulation of translational termination	IEP	HCCA
BP	GO:0006465	signal peptide processing	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0010628	positive regulation of gene expression	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0016485	protein processing	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034250	positive regulation of amide metabolic process	IEP	HCCA
MF	GO:0043021	ribonucleoprotein complex binding	IEP	HCCA
MF	GO:0043022	ribosome binding	IEP	HCCA
BP	GO:0043243	positive regulation of protein-containing complex disassembly	IEP	HCCA
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
BP	GO:0045727	positive regulation of translation	IEP	HCCA
BP	GO:0045901	positive regulation of translational elongation	IEP	HCCA
BP	GO:0045905	positive regulation of translational termination	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051247	positive regulation of protein metabolic process	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	HCCA
CC	GO:1905368	peptidase complex	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000196	Ribosomal_L19/L19e	6	148

External Links

No external refs found!

Ppi_g28399

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation