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  5. LOC_Os11g29200.1

LOC_Os11g29200.1


Description : component Sec24 of Sec23/24 cargo adaptor subcomplex


Gene families : OG_01_0001187 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001187_tree ,
OG_02_0004019 (LandPlants) Phylogenetic Tree(s): OG_02_0004019_tree ,
OG_03_0004416 (SeedPlants) Phylogenetic Tree(s): OG_03_0004416_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os11g29200.1
Cluster HCCA: Cluster_301

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00084390 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein II (COPII) coatomer... 0.03 Archaeplastida
AMTR_s00071p00045940 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 Archaeplastida
AT3G44340 CEF clone eighty-four 0.05 Archaeplastida
Cpa|evm.model.tig00000829.3 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 Archaeplastida
Cre01.g035850 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.04 Archaeplastida
Cre02.g091150 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.03 Archaeplastida
Gb_11357 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.03 Archaeplastida
Mp7g13350.1 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.03 Archaeplastida
Mp7g13560.1 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.02 Archaeplastida
Pp3c1_22750V3.1 No alias Sec23/Sec24 protein transport family protein 0.02 Archaeplastida
Smo140536 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.06 Archaeplastida
Solyc02g082220.3.1 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.04 Archaeplastida
Zm00001e021459_P002 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.07 Archaeplastida
Zm00001e040573_P001 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.07 Archaeplastida
AMTR_s00061p00084390 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein II (COPII) coatomer... 0.03 LandPlants
AT3G44340 CEF clone eighty-four 0.05 LandPlants
GSVIVT01014611001 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 LandPlants
MA_45050g0010 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.02 LandPlants
Mp7g13350.1 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.03 LandPlants
Pp3c1_22750V3.1 No alias Sec23/Sec24 protein transport family protein 0.02 LandPlants
Smo140536 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.06 LandPlants
Zm00001e021459_P002 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.07 LandPlants
AMTR_s00061p00084390 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 SeedPlants
AT3G44340 CEF clone eighty-four 0.05 SeedPlants
GSVIVT01014611001 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 SeedPlants
MA_45050g0010 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.02 SeedPlants
Zm00001e021459_P002 No alias component Sec24 of Sec23/24 cargo adaptor subcomplex 0.07 SeedPlants

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
CC GO:0030127 COPII vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR006896 Sec23/24_trunk_dom 213 453
IPR006900 Sec23/24_helical_dom 553 648
IPR012990 Sec23_24_beta_S 458 541
IPR006895 Znf_Sec23_Sec24 138 176
No external refs found!