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  5. Ppi_g28188

Ppi_g28188


Description : component *(uS10) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0001982 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001982_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g28188

Target Alias Description ECC score Gene Family Method Actions
AT3G45030 No alias Ribosomal protein S10p/S20e family protein 0.03 OrthoFinder output from all 47 species
AT3G47370 No alias Ribosomal protein S10p/S20e family protein 0.06 OrthoFinder output from all 47 species
AT5G62300 No alias Ribosomal protein S10p/S20e family protein 0.02 OrthoFinder output from all 47 species
Ala_g32242 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Als_g48821 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Aob_g00267 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Aob_g09673 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Aop_g23202 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ceric.10G040000.1 Ceric.10G040000 component *(uS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.35G056300.1 Ceric.35G056300 component *(uS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000842.28 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Cre16.g660150 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder output from all 47 species
Dac_g24720 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g24923 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Ehy_g10630 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01018553001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 OrthoFinder output from all 47 species
LOC_Os03g14530.1 LOC_Os03g14530 component RPS20 of SSU proteome 0.04 OrthoFinder output from all 47 species
LOC_Os06g04290.1 LOC_Os06g04290 component RPS20 of SSU proteome 0.05 OrthoFinder output from all 47 species
LOC_Os10g08930.1 LOC_Os10g08930 component RPS20 of SSU proteome 0.04 OrthoFinder output from all 47 species
MA_10429759g0010 No alias component RPS20 of SSU proteome 0.04 OrthoFinder output from all 47 species
Mp2g09440.1 No alias component RPS20 of SSU proteome 0.05 OrthoFinder output from all 47 species
Msp_g24561 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Pir_g54843 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Pir_g57765 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Pir_g63796 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pp3c1_21860V3.1 Pp3c1_21860 Ribosomal protein S10p/S20e family protein 0.02 OrthoFinder output from all 47 species
Ppi_g31000 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g37652 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g23471 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Sam_g48982 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Solyc01g096580.3.1 Solyc01g096580 component RPS20 of SSU proteome 0.07 OrthoFinder output from all 47 species
Tin_g26346 No alias component *(uS10) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Zm00001e001045_P001 Zm00001e001045 component RPS20 of SSU proteome 0.02 OrthoFinder output from all 47 species
Zm00001e036579_P001 Zm00001e036579 component RPS20 of SSU proteome 0.04 OrthoFinder output from all 47 species
Zm00001e038574_P001 Zm00001e038574 component RPS20 of SSU proteome 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006448 regulation of translational elongation IEP HCCA
BP GO:0006449 regulation of translational termination IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034250 positive regulation of amide metabolic process IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP HCCA
BP GO:0043244 regulation of protein-containing complex disassembly IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045727 positive regulation of translation IEP HCCA
BP GO:0045901 positive regulation of translational elongation IEP HCCA
BP GO:0045905 positive regulation of translational termination IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR027486 Ribosomal_S10_dom 39 105
No external refs found!