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  5. Ppi_g27325

Ppi_g27325


Description : component *(uL1) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001297_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g27325

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00167280 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
AMTR_s00053p00163590 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
AT1G08360 No alias Ribosomal protein L1p/L10e family 0.04 OrthoFinder output from all 47 species
Aop_g02409 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Azfi_s0022.g016098 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cba_g36488 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.34G055700.1 Ceric.34G055700 component *(uL1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020697.31 No alias 60S ribosomal protein L10a OS=Oryza sativa subsp. japonica 0.05 OrthoFinder output from all 47 species
Cre02.g101350 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
Dcu_g03488 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
GSVIVT01033841001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Gb_13744 No alias component RPL10a of LSU proteome component 0.03 OrthoFinder output from all 47 species
LOC_Os01g64090.1 LOC_Os01g64090 component RPL10a of LSU proteome component 0.03 OrthoFinder output from all 47 species
LOC_Os02g21660.1 LOC_Os02g21660 component RPL10a of LSU proteome component 0.04 OrthoFinder output from all 47 species
LOC_Os08g44380.1 LOC_Os08g44380 component RPL10a of LSU proteome component 0.04 OrthoFinder output from all 47 species
MA_71921g0010 No alias component RPL10a of LSU proteome component 0.03 OrthoFinder output from all 47 species
Msp_g00232 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Nbi_g03987 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pir_g04954 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Pp3c20_19190V3.1 Pp3c20_19190 Ribosomal protein L1p/L10e family 0.02 OrthoFinder output from all 47 species
Sam_g12736 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Solyc01g009520.4.1 Solyc01g009520 component RPL10a of LSU proteome component 0.03 OrthoFinder output from all 47 species
Solyc06g074300.4.1 Solyc06g074300 component RPL10a of LSU proteome component 0.03 OrthoFinder output from all 47 species
Solyc11g068420.2.1 Solyc11g068420 component RPL10a of LSU proteome component 0.03 OrthoFinder output from all 47 species
Zm00001e019205_P001 Zm00001e019205 component RPL10a of LSU proteome component 0.03 OrthoFinder output from all 47 species
Zm00001e022063_P001 Zm00001e022063 component RPL10a of LSU proteome component 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
MF GO:0008061 chitin binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR028364 Ribosomal_L1/biogenesis 18 213
No external refs found!