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  5. Ppi_g26656

Ppi_g26656


Description : component *(RPP1) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0000349 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000349_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g26656
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
Als_g56083 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Als_g63396 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Aob_g11867 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g22529 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g29611 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g46228 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g71184 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g64518 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cre17.g738300 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Dac_g30739 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01038637001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
LOC_Os08g02340.1 LOC_Os08g02340 component RPP1 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Lfl_g08838 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
MA_90134g0010 No alias component RPP1 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Mp6g11950.1 No alias component RPP1 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Nbi_g22910 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pnu_g32500 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Pp3c1_36220V3.1 Pp3c1_36220 60S acidic ribosomal protein family 0.02 OrthoFinder output from all 47 species
Pp3c20_2800V3.1 Pp3c20_2800 60S acidic ribosomal protein family 0.02 OrthoFinder output from all 47 species
Pp3c23_18100V3.1 Pp3c23_18100 60S acidic ribosomal protein family 0.01 OrthoFinder output from all 47 species
Ppi_g36514 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g03056 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g46416 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g47755 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g48161 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Solyc01g016470.3.1 Solyc01g016470 component RPP1 of LSU proteome component 0.02 OrthoFinder output from all 47 species
Solyc01g104370.4.1 Solyc01g104370 component RPP1 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Tin_g00286 No alias component *(RPP1) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Zm00001e029197_P001 Zm00001e029197 component RPP1 of LSU proteome component 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!