Ppi_g23933

Description : component *(uL29) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0000495 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000495_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ppi_g23933
Cluster	HCCA: Cluster_132

Target	Alias	Description	ECC score	Gene Family Method
AT2G39390	No alias	Ribosomal L29 family protein	0.03	OrthoFinder output from all 47 species
AT3G09500	No alias	Ribosomal L29 family protein	0.04	OrthoFinder output from all 47 species
AT3G55170	No alias	Ribosomal L29 family protein	0.03	OrthoFinder output from all 47 species
AT5G02610	No alias	Ribosomal L29 family protein	0.04	OrthoFinder output from all 47 species
Adi_g130262	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Als_g24513	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g28114	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aob_g10353	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g17159	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aop_g23213	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.39G045700.1	Ceric.39G045700	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000241.79	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Cre14.g617900	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Dac_g29193	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g44954	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
GSVIVT01025050001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Gb_33813	No alias	component RPL35 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Mp6g05620.1	No alias	component RPL35 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Pp3c13_5200V3.1	Pp3c13_5200	Ribosomal L29 family protein	0.02	OrthoFinder output from all 47 species
Pp3c3_2800V3.1	Pp3c3_2800	Ribosomal L29 family protein	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0053.g014105	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g05972	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g23308	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g23420	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g37983	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Smo438324	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Smo79331	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Solyc04g010240.3.1	Solyc04g010240	component RPL35 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Spa_g07344	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Zm00001e040695_P003	Zm00001e040695	component RPL35 of LSU proteome component	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0003779	actin binding	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006448	regulation of translational elongation	IEP	HCCA
BP	GO:0006449	regulation of translational termination	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0010628	positive regulation of gene expression	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034250	positive regulation of amide metabolic process	IEP	HCCA
MF	GO:0043021	ribonucleoprotein complex binding	IEP	HCCA
MF	GO:0043022	ribosome binding	IEP	HCCA
BP	GO:0043243	positive regulation of protein-containing complex disassembly	IEP	HCCA
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
BP	GO:0045727	positive regulation of translation	IEP	HCCA
BP	GO:0045901	positive regulation of translational elongation	IEP	HCCA
BP	GO:0045905	positive regulation of translational termination	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051247	positive regulation of protein metabolic process	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001854	Ribosomal_L29/L35	9	63

External Links

No external refs found!

Ppi_g23933

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation