Description : component *(uS3) of small ribosomal-subunit (SSU) proteome & original description: none
Gene families : OG0001769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001769_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Ppi_g22437 | |
Cluster | HCCA: Cluster_114 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00024p00219330 | evm_27.TU.AmTr_v1... | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.08 | OrthoFinder output from all 47 species | |
AMTR_s00030p00157370 | evm_27.TU.AmTr_v1... | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.03 | OrthoFinder output from all 47 species | |
AT3G53870 | No alias | Ribosomal protein S3 family protein | 0.02 | OrthoFinder output from all 47 species | |
AT5G35530 | No alias | Ribosomal protein S3 family protein | 0.08 | OrthoFinder output from all 47 species | |
Adi_g083363 | No alias | component *(uS3) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
Ala_g13531 | No alias | component *(uS3) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Ala_g20217 | No alias | component *(uS3) of small ribosomal-subunit (SSU)... | 0.06 | OrthoFinder output from all 47 species | |
Aob_g10608 | No alias | component *(uS3) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
Aop_g10053 | No alias | component *(uS3) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.06G062500.1 | Ceric.06G062500 | component *(uS3) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.12G046300.1 | Ceric.12G046300 | component *(uS3) of small ribosomal-subunit (SSU)... | 0.07 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00021462.41 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.08 | OrthoFinder output from all 47 species | |
Cre02.g102250 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.1 | OrthoFinder output from all 47 species | |
Ehy_g13853 | No alias | component *(uS3) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g13854 | No alias | component *(uS3) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01015110001 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01016775001 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01035451001 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.03 | OrthoFinder output from all 47 species | |
Gb_13623 | No alias | component RPS3 of SSU proteome | 0.06 | OrthoFinder output from all 47 species | |
Gb_26536 | No alias | component RPS3 of SSU proteome | 0.06 | OrthoFinder output from all 47 species | |
LOC_Os03g38000.1 | LOC_Os03g38000 | component RPS3 of SSU proteome | 0.08 | OrthoFinder output from all 47 species | |
LOC_Os07g41750.1 | LOC_Os07g41750 | component RPS3 of SSU proteome | 0.05 | OrthoFinder output from all 47 species | |
MA_10436283g0010 | No alias | component RPS3 of SSU proteome | 0.05 | OrthoFinder output from all 47 species | |
MA_120861g0010 | No alias | component RPS3 of SSU proteome | 0.03 | OrthoFinder output from all 47 species | |
Mp1g16730.1 | No alias | component RPS3 of SSU proteome | 0.08 | OrthoFinder output from all 47 species | |
Msp_g00955 | No alias | component *(uS3) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Pir_g61345 | No alias | component *(uS3) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Pp3c11_22640V3.1 | Pp3c11_22640 | Ribosomal protein S3 family protein | 0.08 | OrthoFinder output from all 47 species | |
Pp3c15_21360V3.1 | Pp3c15_21360 | Ribosomal protein S3 family protein | 0.06 | OrthoFinder output from all 47 species | |
Pp3c16_3760V3.1 | Pp3c16_3760 | Ribosomal protein S3 family protein | 0.06 | OrthoFinder output from all 47 species | |
Pp3c5_5330V3.1 | Pp3c5_5330 | Ribosomal protein S3 family protein | 0.03 | OrthoFinder output from all 47 species | |
Pp3c7_2620V3.1 | Pp3c7_2620 | Ribosomal protein S3 family protein | 0.1 | OrthoFinder output from all 47 species | |
Pp3c9_12170V3.1 | Pp3c9_12170 | Ribosomal protein S3 family protein | 0.1 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0049.g013681 | No alias | component *(uS3) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g27040 | No alias | component *(uS3) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
Sam_g27041 | No alias | component *(uS3) of small ribosomal-subunit (SSU)... | 0.06 | OrthoFinder output from all 47 species | |
Smo270414 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.06 | OrthoFinder output from all 47 species | |
Smo270666 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.04 | OrthoFinder output from all 47 species | |
Smo438700 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.03 | OrthoFinder output from all 47 species | |
Solyc07g041310.3.1 | Solyc07g041310 | component RPS3 of SSU proteome | 0.04 | OrthoFinder output from all 47 species | |
Solyc08g061843.1.1 | Solyc08g061843 | component RPS3 of SSU proteome | 0.05 | OrthoFinder output from all 47 species | |
Spa_g10672 | No alias | component *(uS3) of small ribosomal-subunit (SSU)... | 0.05 | OrthoFinder output from all 47 species | |
Spa_g30478 | No alias | component *(uS3) of small ribosomal-subunit (SSU)... | 0.06 | OrthoFinder output from all 47 species | |
Tin_g04971 | No alias | component *(uS3) of small ribosomal-subunit (SSU)... | 0.06 | OrthoFinder output from all 47 species | |
Zm00001e021687_P001 | Zm00001e021687 | component RPS3 of SSU proteome | 0.07 | OrthoFinder output from all 47 species | |
Zm00001e040177_P002 | Zm00001e040177 | component RPS3 of SSU proteome | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
MF | GO:0003746 | translation elongation factor activity | IEP | HCCA |
MF | GO:0005198 | structural molecule activity | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005741 | mitochondrial outer membrane | IEP | HCCA |
CC | GO:0005840 | ribosome | IEP | HCCA |
BP | GO:0006412 | translation | IEP | HCCA |
BP | GO:0006417 | regulation of translation | IEP | HCCA |
BP | GO:0006448 | regulation of translational elongation | IEP | HCCA |
BP | GO:0006449 | regulation of translational termination | IEP | HCCA |
BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0008150 | biological_process | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
BP | GO:0009058 | biosynthetic process | IEP | HCCA |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0009891 | positive regulation of biosynthetic process | IEP | HCCA |
BP | GO:0009893 | positive regulation of metabolic process | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
BP | GO:0010557 | positive regulation of macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0010604 | positive regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0010608 | post-transcriptional regulation of gene expression | IEP | HCCA |
BP | GO:0010628 | positive regulation of gene expression | IEP | HCCA |
BP | GO:0019538 | protein metabolic process | IEP | HCCA |
MF | GO:0019843 | rRNA binding | IEP | HCCA |
CC | GO:0019867 | outer membrane | IEP | HCCA |
CC | GO:0031090 | organelle membrane | IEP | HCCA |
BP | GO:0031325 | positive regulation of cellular metabolic process | IEP | HCCA |
BP | GO:0031328 | positive regulation of cellular biosynthetic process | IEP | HCCA |
CC | GO:0031966 | mitochondrial membrane | IEP | HCCA |
CC | GO:0031968 | organelle outer membrane | IEP | HCCA |
BP | GO:0034248 | regulation of amide metabolic process | IEP | HCCA |
BP | GO:0034250 | positive regulation of amide metabolic process | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
MF | GO:0043021 | ribonucleoprotein complex binding | IEP | HCCA |
MF | GO:0043022 | ribosome binding | IEP | HCCA |
BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
CC | GO:0043226 | organelle | IEP | HCCA |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
CC | GO:0043229 | intracellular organelle | IEP | HCCA |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
BP | GO:0043243 | positive regulation of protein-containing complex disassembly | IEP | HCCA |
BP | GO:0043244 | regulation of protein-containing complex disassembly | IEP | HCCA |
BP | GO:0043603 | amide metabolic process | IEP | HCCA |
BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
MF | GO:0044877 | protein-containing complex binding | IEP | HCCA |
BP | GO:0045727 | positive regulation of translation | IEP | HCCA |
BP | GO:0045901 | positive regulation of translational elongation | IEP | HCCA |
BP | GO:0045905 | positive regulation of translational termination | IEP | HCCA |
BP | GO:0048518 | positive regulation of biological process | IEP | HCCA |
BP | GO:0048522 | positive regulation of cellular process | IEP | HCCA |
BP | GO:0051128 | regulation of cellular component organization | IEP | HCCA |
BP | GO:0051130 | positive regulation of cellular component organization | IEP | HCCA |
BP | GO:0051173 | positive regulation of nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0051246 | regulation of protein metabolic process | IEP | HCCA |
BP | GO:0051247 | positive regulation of protein metabolic process | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
CC | GO:0098588 | bounding membrane of organelle | IEP | HCCA |
CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | HCCA |
No external refs found! |