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  5. AMTR_s00086p00165640

AMTR_s00086p00165640 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00086.104

Description : Chromatin organisation.chromatin remodeling complexes.ATPase core components.Snf2-like group.Chd3/Mi-2 chromatin remodeling factor


Gene families : OG_01_0000082 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000082_tree ,
OG_02_0005856 (LandPlants) Phylogenetic Tree(s): OG_02_0005856_tree ,
OG_03_0008938 (SeedPlants) Phylogenetic Tree(s): OG_03_0008938_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00086p00165640
Cluster HCCA: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
AT1G08060 MOM1, MOM ATP-dependent helicase family protein 0.07 Archaeplastida
AT2G13370 CHR5 chromatin remodeling 5 0.1 Archaeplastida
AT2G25170 PKL, GYM, CHR6,... chromatin remodeling factor CHD3 (PICKLE) 0.06 Archaeplastida
AT2G28290 SYD, CHR3 P-loop containing nucleoside triphosphate hydrolases... 0.07 Archaeplastida
AT2G44980 No alias SNF2 domain-containing protein / helicase... 0.02 Archaeplastida
AT2G46020 CHA2, CHR2, BRM, ATBRM transcription regulatory protein SNF2, putative 0.07 Archaeplastida
AT3G06010 ATCHR12 Homeotic gene regulator 0.04 Archaeplastida
AT5G44800 PKR1, CHR4 chromatin remodeling 4 0.07 Archaeplastida
Cpa|evm.model.tig00000128.11 No alias ISWI chromatin-remodeling complex ATPase CHR17... 0.02 Archaeplastida
Cpa|evm.model.tig00000144.188 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.01 Archaeplastida
Cpa|evm.model.tig00000217.25 No alias Chromatin structure-remodeling complex protein SYD... 0.02 Archaeplastida
Cpa|evm.model.tig00000350.9 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.01 Archaeplastida
Cpa|evm.model.tig00000863.2 No alias TATA-binding protein-associated factor BTAF1... 0.02 Archaeplastida
Cpa|evm.model.tig00020960.24 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre03.g158550 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
Cre03.g179300 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida
Cre07.g325700 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana 0.04 Archaeplastida
Cre08.g377200 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.01 Archaeplastida
Cre09.g390000 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.02 Archaeplastida
Cre12.g508150 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Cre12.g537671 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre16.g647602 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01012117001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.07 Archaeplastida
GSVIVT01017791001 No alias Chromatin organisation.chromatin remodeling... 0.1 Archaeplastida
GSVIVT01017820001 No alias Chromatin organisation.chromatin remodeling... 0.05 Archaeplastida
GSVIVT01017821001 No alias No description available 0.07 Archaeplastida
GSVIVT01018218001 No alias Chromatin organisation.chromatin remodeling... 0.06 Archaeplastida
GSVIVT01025216001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana 0.08 Archaeplastida
GSVIVT01026952001 No alias Chromatin organisation.chromatin remodeling... 0.08 Archaeplastida
GSVIVT01035901001 No alias Chromatin organisation.chromatin remodeling... 0.09 Archaeplastida
GSVIVT01037235001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.08 Archaeplastida
Gb_01673 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Gb_05671 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.05 Archaeplastida
Gb_15026 No alias chromatin remodeling factor (Alc) 0.02 Archaeplastida
Gb_16961 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
Gb_18673 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
Gb_27153 No alias chromatin remodeling factor (Snf2) 0.06 Archaeplastida
Gb_35181 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.04 Archaeplastida
Gb_39649 No alias chromatin remodeling factor (Iswi) 0.04 Archaeplastida
LOC_Os05g05230.1 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
LOC_Os06g01320.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.07 Archaeplastida
LOC_Os06g08480.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
LOC_Os06g14406.1 No alias Chromatin structure-remodeling complex protein SYD... 0.02 Archaeplastida
LOC_Os07g31450.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
MA_102992g0020 No alias Probable chromatin-remodeling complex ATPase chain... 0.02 Archaeplastida
MA_10427682g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10429361g0010 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.02 Archaeplastida
MA_10436824g0010 No alias No annotation 0.05 Archaeplastida
MA_137856g0010 No alias chromatin remodeling factor (Snf2) 0.05 Archaeplastida
MA_141135g0010 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.03 Archaeplastida
MA_470488g0010 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_637555g0010 No alias ATP-dependent helicase BRM OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_8926002g0010 No alias Chromatin structure-remodeling complex protein SYD... 0.03 Archaeplastida
Mp1g05480.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.07 Archaeplastida
Mp1g17010.1 No alias chromatin remodeling factor (Snf2) 0.04 Archaeplastida
Mp1g18560.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.01 Archaeplastida
Mp2g26680.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.04 Archaeplastida
Mp4g12200.1 No alias chromatin remodeling factor (DDM1) 0.02 Archaeplastida
Mp5g24460.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Archaeplastida
Pp3c10_2280V3.1 No alias chromatin remodeling 4 0.04 Archaeplastida
Pp3c11_18940V3.1 No alias chromatin-remodeling protein 11 0.07 Archaeplastida
Pp3c13_14440V3.1 No alias transcription regulatory protein SNF2, putative 0.07 Archaeplastida
Pp3c13_19680V3.1 No alias chromatin remodeling 4 0.05 Archaeplastida
Pp3c14_90V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.07 Archaeplastida
Pp3c18_19040V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Archaeplastida
Pp3c18_19045V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Archaeplastida
Pp3c21_10800V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.08 Archaeplastida
Pp3c27_3890V3.1 No alias Homeotic gene regulator 0.04 Archaeplastida
Pp3c3_15820V3.1 No alias transcription regulatory protein SNF2, putative 0.03 Archaeplastida
Pp3c5_19940V3.1 No alias chromatin remodeling 5 0.04 Archaeplastida
Pp3c6_10390V3.1 No alias chromatin remodeling 5 0.04 Archaeplastida
Smo102849 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Smo155996 No alias Chromatin organisation.chromatin remodeling... 0.07 Archaeplastida
Smo164481 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Smo177985 No alias Chromatin organisation.chromatin remodeling... 0.07 Archaeplastida
Smo440203 No alias Chromatin organisation.chromatin remodeling... 0.04 Archaeplastida
Smo440558 No alias Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.04 Archaeplastida
Smo440815 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.07 Archaeplastida
Solyc01g067390.4.1 No alias chromatin remodeling factor (Iswi) 0.06 Archaeplastida
Solyc01g094800.4.1 No alias chromatin remodeling factor (Snf2) 0.07 Archaeplastida
Solyc02g068560.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 Archaeplastida
Solyc06g010240.3.1 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.08 Archaeplastida
Solyc06g065730.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.06 Archaeplastida
Solyc11g062010.3.1 No alias chromatin remodeling factor (Snf2) 0.07 Archaeplastida
Solyc12g099910.2.1 No alias chromatin remodeling factor (Chd1). component CHR5 of... 0.02 Archaeplastida
Zm00001e010722_P005 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e010908_P001 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e013442_P001 No alias chromatin remodeling factor (Snf2) 0.07 Archaeplastida
Zm00001e017643_P001 No alias chromatin remodeling factor (Iswi) 0.03 Archaeplastida
Zm00001e026331_P001 No alias chromatin remodeling factor (Iswi) 0.08 Archaeplastida
Zm00001e030969_P003 No alias chromatin remodeling factor (Snf2) 0.05 Archaeplastida
Zm00001e036737_P001 No alias Helicase protein MOM1 OS=Arabidopsis thaliana... 0.07 Archaeplastida
Zm00001e040406_P002 No alias chromatin remodeling factor (Snf2) 0.03 Archaeplastida
AT2G25170 PKL, GYM, CHR6,... chromatin remodeling factor CHD3 (PICKLE) 0.04 LandPlants
GSVIVT01035901001 No alias Chromatin organisation.chromatin remodeling... 0.08 LandPlants
Gb_18673 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 LandPlants
LOC_Os06g08480.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 LandPlants
MA_141135g0010 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 LandPlants
Mp5g24460.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 LandPlants
Pp3c18_19040V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 LandPlants
Pp3c18_19045V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.01 LandPlants
Pp3c21_10800V3.1 No alias chromatin remodeling factor CHD3 (PICKLE) 0.08 LandPlants
Smo155996 No alias Chromatin organisation.chromatin remodeling... 0.06 LandPlants
Smo177985 No alias Chromatin organisation.chromatin remodeling... 0.06 LandPlants
Solyc06g065730.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.04 LandPlants
AT2G25170 PKL, GYM, CHR6,... chromatin remodeling factor CHD3 (PICKLE) 0.04 SeedPlants
GSVIVT01035901001 No alias Chromatin organisation.chromatin remodeling... 0.07 SeedPlants
Gb_18673 No alias chromatin remodeling factor (Chd3/Mi-2) 0.03 SeedPlants
LOC_Os06g08480.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 SeedPlants
MA_141135g0010 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 SeedPlants
Solyc06g065730.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.04 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR023780 Chromo_domain 191 239
IPR023780 Chromo_domain 101 159
IPR000330 SNF2_dom 285 583
IPR009462 DUF1086 933 1066
IPR009463 DUF1087 842 906
IPR001650 Helicase_C 641 720
IPR019787 Znf_PHD-finger 53 95
No external refs found!