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  5. Aev_g09926

Aev_g09926


Description : not classified & original description: none


Gene families : OG0007327 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007327_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g09926
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
ATCG00380 RPS4 chloroplast ribosomal protein S4 0.23 OrthoFinder output from all 47 species
Aob_g03663 No alias not classified & original description: none 0.16 OrthoFinder output from all 47 species
Aop_g38513 RPS4 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g77949 RPS4 not classified & original description: none 0.15 OrthoFinder output from all 47 species
Ceric.02G013600.1 RPS4, Ceric.02G013600 component *(uS4c) of small plastid ribosomal-subunit... 0.13 OrthoFinder output from all 47 species
Ceric.09G048000.1 RPS4, Ceric.09G048000 component *(uS4c) of small plastid ribosomal-subunit... 0.23 OrthoFinder output from all 47 species
Ceric.33G023900.1 RPS4, Ceric.33G023900 component *(uS4c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
GSVIVT01021975001 No alias Protein biosynthesis.organelle translation... 0.06 OrthoFinder output from all 47 species
Gb_06832 No alias component psRPS4 of small ribosomal subunit proteome 0.21 OrthoFinder output from all 47 species
Gb_11360 RPS4 component psRPS4 of small ribosomal subunit proteome 0.19 OrthoFinder output from all 47 species
LOC_Os04g16738.1 RPS4, LOC_Os04g16738 component psRPS4 of small ribosomal subunit proteome 0.3 OrthoFinder output from all 47 species
LOC_Os04g16764.1 RPS4, LOC_Os04g16764 component psRPS4 of small ribosomal subunit proteome 0.3 OrthoFinder output from all 47 species
LOC_Os10g38214.1 RPS4, LOC_Os10g38214 component psRPS4 of small ribosomal subunit proteome 0.3 OrthoFinder output from all 47 species
Nbi_g01687 RPS4 not classified & original description: none 0.22 OrthoFinder output from all 47 species
Ore_g23778 RPS4 component *(uS4c) of small plastid ribosomal-subunit... 0.18 OrthoFinder output from all 47 species
Solyc00g500212.1.1 RPS4, Solyc00g500212 component psRPS4 of small ribosomal subunit proteome 0.07 OrthoFinder output from all 47 species
Solyc09g015330.2.1 Solyc09g015330 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc11g022610.1.1 RPS4, Solyc11g022610 30S ribosomal protein S4, chloroplastic OS=Solanum... 0.07 OrthoFinder output from all 47 species
Spa_g55822 RPS4 not classified & original description: none 0.09 OrthoFinder output from all 47 species
Zm00001e003895_P001 RPS4, Zm00001e003895 component psRPS4 of small ribosomal subunit proteome 0.14 OrthoFinder output from all 47 species
Zm00001e003897_P001 RPS4, Zm00001e003897 component psRPS4 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
Zm00001e003908_P001 RPS4, Zm00001e003908 component psRPS4 of small ribosomal subunit proteome 0.14 OrthoFinder output from all 47 species
Zm00001e013560_P001 RPS4, Zm00001e013560 component psRPS4 of small ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species
Zm00001e042033_P001 RPS4, Zm00001e042033 component psRPS4 of small ribosomal subunit proteome 0.14 OrthoFinder output from all 47 species
Zm00001e042054_P001 RPS4, Zm00001e042054 component psRPS4 of small ribosomal subunit proteome 0.14 OrthoFinder output from all 47 species
Zm00001e042078_P001 RPS4, Zm00001e042078 component psRPS4 of small ribosomal subunit proteome 0.14 OrthoFinder output from all 47 species
Zm00001e042098_P001 RPS4, Zm00001e042098 component psRPS4 of small ribosomal subunit proteome 0.14 OrthoFinder output from all 47 species
Zm00001e042353_P001 RPS4, Zm00001e042353 component psRPS4 of small ribosomal subunit proteome 0.14 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016168 chlorophyll binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 97 143
No external refs found!