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  5. Ppi_g18660

Ppi_g18660


Description : not classified & original description: none


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g18660
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AT3G16010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.01 OrthoFinder output from all 47 species
Adi_g098770 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06010 No alias group-II intron mitochondrial splicing factor *(MISF68)... 0.02 OrthoFinder output from all 47 species
Als_g15135 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g14296 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g58420 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0333.g065453 No alias not classified & original description: CDS=1-1836 0.03 OrthoFinder output from all 47 species
Cba_g78360 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G098700.1 Ceric.03G098700 not classified & original description: pacid=50572397... 0.02 OrthoFinder output from all 47 species
Dac_g07047 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g10060 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008815001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.02 OrthoFinder output from all 47 species
GSVIVT01015982001 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.02 OrthoFinder output from all 47 species
GSVIVT01017111001 No alias Pentatricopeptide repeat-containing protein At3g16010... 0.02 OrthoFinder output from all 47 species
GSVIVT01017293001 No alias Pentatricopeptide repeat-containing protein At1g52640,... 0.02 OrthoFinder output from all 47 species
GSVIVT01027388001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.02 OrthoFinder output from all 47 species
LOC_Os01g05860.1 LOC_Os01g05860 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
LOC_Os02g52220.1 LOC_Os02g52220 Pentatricopeptide repeat-containing protein At1g73400,... 0.01 OrthoFinder output from all 47 species
LOC_Os03g11020.1 LOC_Os03g11020 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Len_g12106 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g01806 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_12748g0020 No alias Pentatricopeptide repeat-containing protein At1g79540... 0.01 OrthoFinder output from all 47 species
MA_355286g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.02 OrthoFinder output from all 47 species
MA_8206159g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.02 OrthoFinder output from all 47 species
Pir_g09765 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g27162 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e005446_P003 Zm00001e005446 group-II intron mitochondrial splicing factor (MISF68) 0.02 OrthoFinder output from all 47 species
Zm00001e036197_P001 Zm00001e036197 Pentatricopeptide repeat-containing protein At1g71060,... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 503 551
IPR002885 Pentatricopeptide_repeat 608 651
IPR002885 Pentatricopeptide_repeat 433 481
IPR002885 Pentatricopeptide_repeat 576 606
IPR002885 Pentatricopeptide_repeat 403 431
IPR002885 Pentatricopeptide_repeat 701 755
No external refs found!