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  5. Ppi_g18580

Ppi_g18580


Description : not classified & original description: none


Gene families : OG0004328 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004328_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g18580
Cluster HCCA: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00154930 evm_27.TU.AmTr_v1... F-box/LRR-repeat protein 12 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT3G07550 No alias RNI-like superfamily protein 0.04 OrthoFinder output from all 47 species
Nbi_g26403 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g34206 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 182 200
IPR041567 COI1_F-box 32 70
No external refs found!