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  5. Ppi_g18187

Ppi_g18187 (ATCOL4, COL4)


Aliases : ATCOL4, COL4

Description : floral promoter *(CONSTANS) & original description: none


Gene families : OG0001141 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001141_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g18187
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Adi_g024051 COL2, ATCOL2 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g13330 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene31131.t1 ATCOL5, COL5,... floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05304 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01582 ATCOL4, COL4 floral promoter *(CONSTANS) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g06077 No alias floral promoter *(CONSTANS) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e007691_P001 Zm00001e007691 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Zm00001e041152_P001 ATCOL5, COL5,... transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000315 Znf_B-box 45 90
IPR000315 Znf_B-box 4 44
IPR010402 CCT_domain 314 356
No external refs found!