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  5. Ppi_g17511

Ppi_g17511


Description : ndhA-specific mRNA splicing factor & original description: none


Gene families : OG0007004 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007004_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g17511
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AT2G35130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Ala_g26348 No alias ndhA-specific mRNA splicing factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g09698 No alias ndhA-specific mRNA splicing factor & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.28G053600.1 Ceric.28G053600 ndhA-specific mRNA splicing factor & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01012065001 No alias Photosynthesis.photophosphorylation.chlororespiration.NAD... 0.03 OrthoFinder output from all 47 species
Lfl_g34115 No alias ndhA-specific mRNA splicing factor & original description: none 0.03 OrthoFinder output from all 47 species
Mp1g28660.1 No alias ndhA-specific mRNA splicing factor. plastidial RNA... 0.02 OrthoFinder output from all 47 species
Pir_g04300 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g20465 No alias plastidial RNA processing factor *(PPR287) & original... 0.03 OrthoFinder output from all 47 species
Solyc02g068760.4.1 Solyc02g068760 ndhA-specific mRNA splicing factor 0.04 OrthoFinder output from all 47 species
Zm00001e013734_P002 Zm00001e013734 ndhA-specific mRNA splicing factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 219 250
IPR033443 PPR_long 313 472
IPR002885 Pentatricopeptide_repeat 257 306
IPR002885 Pentatricopeptide_repeat 502 549
IPR002885 Pentatricopeptide_repeat 152 200
No external refs found!