1. Home
  2. Species
  3. Pyrrosia piloselloides
  4. Sequence
  5. Ppi_g16610

Ppi_g16610 (HVT1, ATVT-1)


Aliases : HVT1, ATVT-1

Description : not classified & original description: none


Gene families : OG0005875 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005875_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g16610

Target Alias Description ECC score Gene Family Method Actions
AT1G06670 NIH nuclear DEIH-boxhelicase 0.03 OrthoFinder output from all 47 species
AT2G30800 HVT1, ATVT-1 helicase in vascular tissue and tapetum 0.03 OrthoFinder output from all 47 species
Aspi01Gene09475.t1 HVT1, ATVT-1,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01020822001 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Len_g01923 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g02414 HVT1, ATVT-1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10434659g0010 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g10294 HVT1, ATVT-1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e028983_P004 HVT1, ATVT-1,... DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR011709 DEAD-box_helicase_OB_fold 955 1042
IPR001374 R3H_dom 78 134
IPR011545 DEAD/DEAH_box_helicase_dom 248 400
IPR007502 Helicase-assoc_dom 795 874
IPR001650 Helicase_C 609 730
No external refs found!