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  5. Ppi_g16606

Ppi_g16606 (HCF173)


Aliases : HCF173

Description : protein involved in PS-II assembly *(HCF173) & original description: none


Gene families : OG0006399 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006399_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g16606
Cluster HCCA: Cluster_255

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00232880 HCF173,... Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
AT1G16720 HCF173 high chlorophyll fluorescence phenotype 173 0.07 OrthoFinder output from all 47 species
Adi_g026392 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.08 OrthoFinder output from all 47 species
Aev_g02401 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.04 OrthoFinder output from all 47 species
Ala_g08503 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.09 OrthoFinder output from all 47 species
Als_g18490 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.05 OrthoFinder output from all 47 species
Aob_g05244 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.04 OrthoFinder output from all 47 species
Aop_g05654 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.05 OrthoFinder output from all 47 species
Aspi01Gene21050.t1 HCF173, Aspi01Gene21050 protein involved in PS-II assembly *(HCF173) & original... 0.05 OrthoFinder output from all 47 species
Cba_g03951 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.07 OrthoFinder output from all 47 species
Ceric.24G028300.1 HCF173, Ceric.24G028300 protein involved in PS-II assembly *(HCF173) & original... 0.1 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020830.55 HCF173 No description available 0.02 OrthoFinder output from all 47 species
Cre13.g578650 HCF173 Photosynthesis.photophosphorylation.photosystem... 0.02 OrthoFinder output from all 47 species
Dac_g00930 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.05 OrthoFinder output from all 47 species
Dcu_g01607 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
Dde_g21297 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.05 OrthoFinder output from all 47 species
Ehy_g25310 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01029443001 HCF173 Photosynthesis.photophosphorylation.photosystem... 0.06 OrthoFinder output from all 47 species
Gb_02290 HCF173 HCF173 protein involved in PS-II assembly 0.04 OrthoFinder output from all 47 species
LOC_Os02g04510.1 HCF173, LOC_Os02g04510 HCF173 protein involved in PS-II assembly 0.03 OrthoFinder output from all 47 species
LOC_Os06g49120.1 HCF173, LOC_Os06g49120 HCF173 protein involved in PS-II assembly 0.08 OrthoFinder output from all 47 species
Len_g57874 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.02 OrthoFinder output from all 47 species
Lfl_g12273 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
MA_21385g0010 HCF173 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp3g04800.1 HCF173 HCF173 protein involved in PS-II assembly 0.06 OrthoFinder output from all 47 species
Msp_g10500 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.12 OrthoFinder output from all 47 species
Nbi_g01268 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.06 OrthoFinder output from all 47 species
Ore_g17922 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.06 OrthoFinder output from all 47 species
Pir_g20180 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011911 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.03 OrthoFinder output from all 47 species
Sam_g09334 No alias protein involved in PS-II assembly *(HCF173) & original... 0.05 OrthoFinder output from all 47 species
Smo183274 HCF173 Photosynthesis.photophosphorylation.photosystem... 0.04 OrthoFinder output from all 47 species
Solyc08g016080.3.1 HCF173, Solyc08g016080 HCF173 protein involved in PS-II assembly 0.05 OrthoFinder output from all 47 species
Spa_g26192 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.04 OrthoFinder output from all 47 species
Tin_g01089 HCF173 protein involved in PS-II assembly *(HCF173) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e013206_P002 HCF173, Zm00001e013206 HCF173 protein involved in PS-II assembly 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0071949 FAD binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR013857 NADH-UbQ_OxRdtase-assoc_prot30 298 398
IPR016040 NAD(P)-bd_dom 155 230
IPR016040 NAD(P)-bd_dom 464 544
No external refs found!