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  5. Aev_g09512

Aev_g09512


Description : regulatory factor *(RBP45/47) of mRNA stress granule formation & original description: none


Gene families : OG0000531 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000531_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g09512
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00157p00079360 ATRBP47C',... Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00157p00080130 ATRBP47B,... Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia 0.03 OrthoFinder output from all 47 species
Als_g26974 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Aop_g10963 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Dac_g10517 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
GSVIVT01031780001 ATRBP47B, RBP47B Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia 0.03 OrthoFinder output from all 47 species
LOC_Os04g37690.1 ATRBP47C',... mRNA-binding regulatory factor (RBP45/47) 0.02 OrthoFinder output from all 47 species
Len_g17526 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Msp_g10876 ATRBP47B, RBP47B regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Nbi_g09272 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
Solyc07g064510.3.1 ATRBP45C, Solyc07g064510 mRNA-binding regulatory factor (RBP45/47) 0.03 OrthoFinder output from all 47 species
Zm00001e012505_P001 ATRBP45A,... mRNA-binding regulatory factor (RBP45/47) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003989 acetyl-CoA carboxylase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
CC GO:0009317 acetyl-CoA carboxylase complex IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016421 CoA carboxylase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
MF GO:0035673 oligopeptide transmembrane transporter activity IEP HCCA
MF GO:0042887 amide transmembrane transporter activity IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
MF GO:1904680 peptide transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 271 334
IPR000504 RRM_dom 149 218
IPR000504 RRM_dom 56 123
No external refs found!