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  5. Ppi_g15290

Ppi_g15290


Description : not classified & original description: none


Gene families : OG0006545 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006545_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g15290

Target Alias Description ECC score Gene Family Method Actions
AT3G23020 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g014933 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g14753 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g05556 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.27G000500.1 Ceric.27G000500 not classified & original description: pacid=50606226... 0.06 OrthoFinder output from all 47 species
Dcu_g09918 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g12772 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g13366 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20482 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004055 No alias not classified & original description: CDS=1-1875 0.04 OrthoFinder output from all 47 species
Smo77736 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.03 OrthoFinder output from all 47 species
Tin_g09786 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 286 331
IPR002885 Pentatricopeptide_repeat 637 681
IPR002885 Pentatricopeptide_repeat 175 217
IPR002885 Pentatricopeptide_repeat 810 853
IPR002885 Pentatricopeptide_repeat 705 747
IPR002885 Pentatricopeptide_repeat 253 279
IPR033443 PPR_long 477 586
IPR002885 Pentatricopeptide_repeat 604 630
IPR002885 Pentatricopeptide_repeat 359 387
No external refs found!