- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : PPR40
Description : not classified & original description: none
Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00044p00153760 | evm_27.TU.AmTr_v1... | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00119p00029960 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At5g15010,... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00119p00084460 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At2g27800,... | 0.06 | OrthoFinder output from all 47 species | |
| AT1G02420 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| AT1G20300 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT1G73400 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT1G80880 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| AT3G16010 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| AT5G14820 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT5G43820 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g012989 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aev_g03187 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g07419 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g15608 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0333.g065453 | No alias | not classified & original description: CDS=1-1836 | 0.06 | OrthoFinder output from all 47 species | |
| Cba_g10252 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.09G082800.1 | Ceric.09G082800 | not classified & original description: pacid=50587508... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.25G036800.1 | Ceric.25G036800 | group-II intron mitochondrial splicing factor *(MISF68)... | 0.03 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000737.24 | No alias | No description available | 0.01 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00020684.46 | No alias | No description available | 0.01 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00020723.110 | No alias | No description available | 0.01 | OrthoFinder output from all 47 species | |
| Dac_g07047 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dac_g10060 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g11222 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g05532 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g39023 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g02250 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01008815001 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.06 | OrthoFinder output from all 47 species | |
| GSVIVT01014289001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01015982001 | No alias | Pentatricopeptide repeat-containing protein At1g80880,... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01017111001 | No alias | Pentatricopeptide repeat-containing protein At3g16010... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01017293001 | No alias | Pentatricopeptide repeat-containing protein At1g52640,... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01026360001 | No alias | Pentatricopeptide repeat-containing protein At5g18390,... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01027388001 | No alias | Pentatricopeptide repeat-containing protein At1g80550,... | 0.06 | OrthoFinder output from all 47 species | |
| Gb_23459 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g05860.1 | LOC_Os01g05860 | Putative pentatricopeptide repeat-containing protein... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os01g60010.1 | LOC_Os01g60010 | Pentatricopeptide repeat-containing protein At5g15010,... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os02g52220.1 | LOC_Os02g52220 | Pentatricopeptide repeat-containing protein At1g73400,... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os03g11020.1 | LOC_Os03g11020 | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| Len_g19159 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| MA_10139g0010 | No alias | Pentatricopeptide repeat-containing protein At3g60050... | 0.03 | OrthoFinder output from all 47 species | |
| MA_10432868g0030 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| MA_10433557g0010 | No alias | Pentatricopeptide repeat-containing protein At2g27800,... | 0.02 | OrthoFinder output from all 47 species | |
| MA_10434663g0010 | No alias | Pentatricopeptide repeat-containing protein At5g11310,... | 0.03 | OrthoFinder output from all 47 species | |
| MA_12748g0020 | No alias | Pentatricopeptide repeat-containing protein At1g79540... | 0.04 | OrthoFinder output from all 47 species | |
| MA_128052g0010 | No alias | Pentatricopeptide repeat-containing protein At3g53700,... | 0.03 | OrthoFinder output from all 47 species | |
| MA_355286g0010 | No alias | Pentatricopeptide repeat-containing protein At5g15010,... | 0.04 | OrthoFinder output from all 47 species | |
| MA_38485g0010 | No alias | Pentatricopeptide repeat-containing protein At1g63080,... | 0.03 | OrthoFinder output from all 47 species | |
| MA_39587g0010 | No alias | Pentatricopeptide repeat-containing protein At2g13420,... | 0.03 | OrthoFinder output from all 47 species | |
| MA_8206159g0010 | No alias | Pentatricopeptide repeat-containing protein At5g15010,... | 0.05 | OrthoFinder output from all 47 species | |
| MA_845827g0010 | No alias | Pentatricopeptide repeat-containing protein At1g06710,... | 0.03 | OrthoFinder output from all 47 species | |
| Mp2g09100.1 | No alias | Pentatricopeptide repeat-containing protein At3g06920... | 0.03 | OrthoFinder output from all 47 species | |
| Mp4g20290.1 | No alias | Pentatricopeptide repeat-containing protein At3g06920... | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g08820 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g27283 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g08945 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Solyc01g097730.4.1 | Solyc01g097730 | Pentatricopeptide repeat-containing protein At3g60050... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc03g116540.1.1 | Solyc03g116540 | Pentatricopeptide repeat-containing protein At1g52640,... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc03g117570.3.1 | Solyc03g117570 | Pentatricopeptide repeat-containing protein At1g80880,... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc04g071280.3.1 | Solyc04g071280 | Pentatricopeptide repeat-containing protein At3g61360... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc04g076370.4.1 | Solyc04g076370 | Pentatricopeptide repeat-containing protein At2g27800,... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc04g079150.1.1 | Solyc04g079150 | Pentatricopeptide repeat-containing protein At1g73400,... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc04g081950.4.1 | Solyc04g081950 | Pentatricopeptide repeat-containing protein At1g20300,... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc09g097840.2.1 | Solyc09g097840 | Pentatricopeptide repeat-containing protein At5g18390,... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc11g071670.2.1 | Solyc11g071670 | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g47474 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e005446_P003 | Zm00001e005446 | group-II intron mitochondrial splicing factor (MISF68) | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e005758_P001 | Zm00001e005758 | Pentatricopeptide repeat-containing protein At1g77360,... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e006773_P001 | Zm00001e006773 | Pentatricopeptide repeat-containing protein At1g80550,... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e025816_P001 | Zm00001e025816 | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e026896_P001 | Zm00001e026896 | Pentatricopeptide repeat-containing protein At3g62470,... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e028873_P001 | Zm00001e028873 | Pentatricopeptide repeat-containing protein At5g15010,... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e036197_P001 | Zm00001e036197 | Pentatricopeptide repeat-containing protein At1g71060,... | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0016043 | cellular component organization | IEP | HCCA |
| BP | GO:0022607 | cellular component assembly | IEP | HCCA |
| BP | GO:0043248 | proteasome assembly | IEP | HCCA |
| BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 352 | 383 |
| IPR002885 | Pentatricopeptide_repeat | 464 | 492 |
| IPR002885 | Pentatricopeptide_repeat | 624 | 673 |
| IPR002885 | Pentatricopeptide_repeat | 499 | 543 |
| IPR002885 | Pentatricopeptide_repeat | 286 | 334 |
| IPR002885 | Pentatricopeptide_repeat | 565 | 614 |
| IPR002885 | Pentatricopeptide_repeat | 392 | 439 |
| No external refs found! |