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Ppi_g14332 (PUB13, ATPUB13)


Aliases : PUB13, ATPUB13

Description : E3 ubiquitin ligase & original description: none


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g14332
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00030110 PUB15,... U-box domain-containing protein 15 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT3G07360 PUB9, ATPUB9 plant U-box 9 0.03 OrthoFinder output from all 47 species
Als_g13982 PUB13, ATPUB13 E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g03476 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene31832.t1 PUB13, ATPUB13,... E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44183.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44184.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44185.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g009437 PUB8, B80 not classified & original description: CDS=1-1359 0.03 OrthoFinder output from all 47 species
Azfi_s0060.g034769 PUB13, ATPUB13 E3 ubiquitin ligase & original description: CDS=1-2214 0.04 OrthoFinder output from all 47 species
Azfi_s0497.g073607 PUB12, AtPUB12 not classified & original description: CDS=1-549 0.02 OrthoFinder output from all 47 species
Azfi_s2299.g110335 PUB14, ATPUB14 not classified & original description: CDS=293-1597 0.05 OrthoFinder output from all 47 species
Ceric.1Z057600.1 PUB13, ATPUB13,... E3 ubiquitin ligase & original description:... 0.04 OrthoFinder output from all 47 species
Dde_g03920 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g04784 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os02g49950.1 LOC_Os02g49950 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
LOC_Os03g32100.1 LOC_Os03g32100 U-box domain-containing protein 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os06g01304.1 PUB14, ATPUB14,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
LOC_Os12g38210.1 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
MA_103976g0010 ATPUB17, PUB17 U-box domain-containing protein 17 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_133008g0010 PUB14, ATPUB14 U-box domain-containing protein 14 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Nbi_g03090 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g07479 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g17953 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0104.g020085 PUB13, ATPUB13 not classified & original description: CDS=359-691 0.02 OrthoFinder output from all 47 species
Sam_g19747 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc09g018230.1.1 Solyc09g018230 U-box domain-containing protein 16 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0015095 magnesium ion transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0015693 magnesium ion transport IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 263 332
IPR000225 Armadillo 473 511
IPR000225 Armadillo 432 470
IPR000225 Armadillo 390 429
No external refs found!