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  5. Ppi_g14323

Ppi_g14323


Description : scaffold component *(GANP/SAC3) of TREX-2 mRNP trafficking complex & original description: none


Gene families : OG0001595 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001595_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g14323

Target Alias Description ECC score Gene Family Method Actions
AT3G06290 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.06 OrthoFinder output from all 47 species
Aob_g16280 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.06 OrthoFinder output from all 47 species
Aspi01Gene27224.t1 Aspi01Gene27224 scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 OrthoFinder output from all 47 species
Azfi_s0682.g082025 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 OrthoFinder output from all 47 species
Ceric.08G063500.1 Ceric.08G063500 scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.1 OrthoFinder output from all 47 species
Ceric.18G038000.1 Ceric.18G038000 scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001278.20 No alias RNA processing.messenger ribonucleoprotein particle... 0.01 OrthoFinder output from all 47 species
Dcu_g05843 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.08 OrthoFinder output from all 47 species
GSVIVT01017853001 No alias RNA processing.messenger ribonucleoprotein particle... 0.09 OrthoFinder output from all 47 species
Gb_02851 No alias SAC3 family protein B OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os07g45160.1 LOC_Os07g45160 scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.05 OrthoFinder output from all 47 species
MA_10433102g0010 No alias scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.03 OrthoFinder output from all 47 species
MA_10433322g0010 No alias SAC3 family protein B OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Mp1g09900.1 No alias scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.06 OrthoFinder output from all 47 species
Msp_g14371 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 OrthoFinder output from all 47 species
Ore_g37699 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002239 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 OrthoFinder output from all 47 species
Sam_g50982 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 OrthoFinder output from all 47 species
Smo438035 No alias RNA processing.messenger ribonucleoprotein particle... 0.03 OrthoFinder output from all 47 species
Solyc12g035670.3.1 Solyc12g035670 scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.05 OrthoFinder output from all 47 species
Tin_g09793 No alias scaffold component *(GANP/SAC3) of TREX-2 mRNP... 0.03 OrthoFinder output from all 47 species
Zm00001e035716_P003 Zm00001e035716 scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.04 OrthoFinder output from all 47 species
Zm00001e035722_P001 Zm00001e035722 SAC3 family protein B OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR005062 SAC3/GANP/THP3_conserved 292 585
No external refs found!