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  5. Ppi_g14315

Ppi_g14315 (LINC2)


Aliases : LINC2

Description : nuclear lamina lamin-like protein *(CRWN) & original description: none


Gene families : OG0002096 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002096_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g14315
Cluster HCCA: Cluster_298

Target Alias Description ECC score Gene Family Method Actions
AT1G67230 LINC1 little nuclei1 0.03 OrthoFinder output from all 47 species
Adi_g018491 LINC3 nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
Adi_g055294 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Aev_g06792 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
Ala_g08422 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
Als_g03902 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Aob_g07969 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
Aop_g06258 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Cba_g72039 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g09858 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g07133 LINC1 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g23134 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01011972001 LINC3 Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... 0.04 OrthoFinder output from all 47 species
LOC_Os01g56140.1 LINC4, LOC_Os01g56140 CRWN nuclear lamina lamin-like protein 0.02 OrthoFinder output from all 47 species
Spa_g26205 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
MF GO:2001070 starch binding IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!