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  5. Ppi_g13956

Ppi_g13956


Description : meiotic crossover accessory E3 ubiquitin ligase *(HEI10/ZIP3) & original description: none


Gene families : OG0007798 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007798_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g13956
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
AT1G53490 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
Dcu_g44606 No alias meiotic crossover accessory E3 ubiquitin ligase... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0004312 fatty acid synthase activity IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0009922 fatty acid elongase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 2 43
No external refs found!