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  5. Ppi_g13024

Ppi_g13024


Description : circadian clock transcriptional co-activator *(LNK) & original description: none


Gene families : OG0003774 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003774_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g13024

Target Alias Description ECC score Gene Family Method Actions
AT3G54500 No alias BEST Arabidopsis thaliana protein match is: dentin... 0.02 OrthoFinder output from all 47 species
Adi_g059007 No alias circAdian clock transcriptional co-activator *(LNK) &... 0.02 OrthoFinder output from all 47 species
Als_g16387 No alias circadian clock transcriptional co-activator *(LNK) &... 0.02 OrthoFinder output from all 47 species
Aop_g18072 No alias circadian clock transcriptional co-activator *(LNK) &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene04721.t1 Aspi01Gene04721 circadian clock transcriptional co-activator *(LNK) &... 0.04 OrthoFinder output from all 47 species
Azfi_s0093.g043219 No alias circadian clock transcriptional co-activator *(LNK) &... 0.04 OrthoFinder output from all 47 species
Ceric.19G049900.1 Ceric.19G049900 circadian clock transcriptional co-activator *(LNK) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01003080001 No alias Protein LNK1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01003081001 No alias Multi-process regulation.circadian clock.evening element... 0.02 OrthoFinder output from all 47 species
LOC_Os01g31360.2 LOC_Os01g31360 LNK circadian clock transcriptional co-activator 0.04 OrthoFinder output from all 47 species
LOC_Os03g27019.1 LOC_Os03g27019 LNK circadian clock transcriptional co-activator 0.03 OrthoFinder output from all 47 species
Len_g35037 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g26965 No alias circadian clock transcriptional co-activator *(LNK) &... 0.04 OrthoFinder output from all 47 species
MA_10428838g0010 No alias LNK circadian clock transcriptional co-activator 0.02 OrthoFinder output from all 47 species
Msp_g15350 No alias circadian clock transcriptional co-activator *(LNK) &... 0.03 OrthoFinder output from all 47 species
Pir_g07135 No alias circadian clock transcriptional co-activator *(LNK) &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008429 No alias circadian clock transcriptional co-activator *(LNK) &... 0.02 OrthoFinder output from all 47 species
Sam_g10483 No alias circadian clock transcriptional co-activator *(LNK) &... 0.03 OrthoFinder output from all 47 species
Zm00001e001871_P006 Zm00001e001871 LNK circadian clock transcriptional co-activator 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0004743 pyruvate kinase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0030955 potassium ion binding IEP HCCA
MF GO:0031420 alkali metal ion binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA

No InterPro domains available for this sequence

No external refs found!