Zm00001d027412 (GRMZM2G040762)

Aliases : GRMZM2G040762

Description : 27.1.20 RNA.processing.degradation dicer Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs. dicer-like 1 (DCL1)

Gene families : OG_01_0000130 (Gene family) Phylogenetic Tree(s): OG0000130_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d027412

Target Alias Description ECC score Gene Family Method Actions
AT5G20320 DCL4, ATDCL4 dicer-like 4 0.04 Gene family
Cre07.g345900 No alias No description available 0.02 Gene family
LOC_Os04g43050 Os04g0509300 27.1.20 RNA.processing.degradation dicer Encodes an... 0.03 Gene family
MA_3182872g0010 No alias 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.05 Gene family
Solyc07g005030.3.1 Solyc07g005030.3 27.1.20 RNA.processing.degradation dicer Encodes an... 0.02 Gene family
Solyc08g067210.3.1 Solyc08g067210.3 No description available 0.05 Gene family

Type GO Term Name Evidence Source
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000999 RNase_III_dom 1624 1737
IPR000999 RNase_III_dom 1402 1549
IPR011545 DEAD/DEAH_box_helicase_dom 276 439
IPR003100 PAZ_dom 1222 1365
IPR001650 Helicase_C 676 791
IPR005034 Dicer_dimerisation_dom 866 954
IPR014720 dsRBD_dom 1764 1822
No external refs found!