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  5. Ppi_g11416

Ppi_g11416


Description : pre-mRNA splicing factor *(SF1) & original description: none


Gene families : OG0000568 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000568_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g11416

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00155240 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Ala_g13487 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g52145 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20951 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g73082 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G107100.1 Ceric.01G107100 pre-mRNA splicing factor *(SF1) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.21G060800.1 Ceric.21G060800 pre-mRNA splicing factor *(SF1) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.28G060200.1 Ceric.28G060200 pre-mRNA splicing factor *(SF1) & original description:... 0.03 OrthoFinder output from all 47 species
Ehy_g16716 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g30248 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Gb_09287 No alias pre-mRNA splicing factor (SF1) 0.03 OrthoFinder output from all 47 species
Gb_23987 No alias pre-mRNA splicing factor (SF1) 0.02 OrthoFinder output from all 47 species
Len_g10453 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g12745 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g29785 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
MA_8555g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g14137 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25454 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16656 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g18592 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g14069 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e008383_P001 Zm00001e008383 pre-mRNA splicing factor (SF1) 0.02 OrthoFinder output from all 47 species
Zm00001e040741_P001 Zm00001e040741 pre-mRNA splicing factor (SF1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR032570 SF1-HH 357 468
IPR004088 KH_dom_type_1 487 560
IPR000504 RRM_dom 724 793
No external refs found!