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  5. Aev_g08908

Aev_g08908 (AGL16)


Aliases : AGL16

Description : MADS/AGL-type transcription factor & original description: none


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g08908
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00254030 SHP2, AGL5,... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
AMTR_s00047p00190220 AGL4, SEP2,... RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
AMTR_s00066p00109320 AP3, ATAP3,... RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
AT1G26310 AGL10, CAL1, CAL K-box region and MADS-box transcription factor family protein 0.02 OrthoFinder output from all 47 species
AT1G77950 AGL67 AGAMOUS-like 67 0.02 OrthoFinder output from all 47 species
AT2G22540 SVP, AGL22 K-box region and MADS-box transcription factor family protein 0.03 OrthoFinder output from all 47 species
Adi_g001519 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g33718 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21518 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g76647 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G004300.1 AGL10, CAL1,... not classified & original description: pacid=50627317... 0.03 OrthoFinder output from all 47 species
GSVIVT01003864001 AGL16 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
GSVIVT01006592001 AGL61, DIA RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
GSVIVT01008560001 SOC1, AGL20, ATSOC1 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
GSVIVT01014093001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
LOC_Os02g07430.1 AGL32, TT16,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os06g22760.1 AGL61, DIA,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Lfl_g36481 No alias MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
MA_10256834g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_15122g0010 AGL16 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_8748850g0010 AGL24 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_9544285g0010 AGL42 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g42970 AGL30 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g62136 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003070 AGL14 MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009704 ANR1, AGL44 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Smo121275 AGL7, AP1 RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
Solyc12g056460.3.1 SOC1, AGL20,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Spa_g53600 AGL42 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g23921 AGL7, AP1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e018993_P001 AGL62, Zm00001e018993 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e039610_P001 AGL8, FUL, Zm00001e039610 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR002487 TF_Kbox 85 170
IPR002100 TF_MADSbox 10 57
No external refs found!