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  5. Ppi_g09482

Ppi_g09482 (EMB33, SUS2, EMB177, EMB14)


Aliases : EMB33, SUS2, EMB177, EMB14

Description : protein factor *(PRPF8/SUS2) of MAC spliceosome-associated complex & original description: none


Gene families : OG0003463 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003463_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g09482

Target Alias Description ECC score Gene Family Method Actions
AT1G80070 EMB33, SUS2,... Pre-mRNA-processing-splicing factor 0.05 OrthoFinder output from all 47 species
AT4G38780 No alias Pre-mRNA-processing-splicing factor 0.03 OrthoFinder output from all 47 species
Ala_g15277 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.04 OrthoFinder output from all 47 species
Als_g29416 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
Aop_g13684 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.02 OrthoFinder output from all 47 species
Aspi01Gene05886.t1 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
Dcu_g02064 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.04 OrthoFinder output from all 47 species
Dde_g02414 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
Gb_00344 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.04 OrthoFinder output from all 47 species
LOC_Os05g07050.1 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.02 OrthoFinder output from all 47 species
LOC_Os06g07080.1 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.03 OrthoFinder output from all 47 species
Len_g05452 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.05 OrthoFinder output from all 47 species
MA_7388g0020 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.02 OrthoFinder output from all 47 species
Msp_g13516 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
Smo173603 EMB33, SUS2,... RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Spa_g12840 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
Tin_g07648 EMB33, SUS2,... protein factor *(PRPF8/SUS2) of MAC... 0.03 OrthoFinder output from all 47 species
Zm00001e036397_P001 EMB33, SUS2,... protein factor PRPF8/SUS2 of U5 small nuclear... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0017070 U6 snRNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000555 JAMM/MPN+_dom 2148 2247
IPR019582 RRM_spliceosomal_PrP8 1033 1123
IPR019581 Prp8_U5-snRNA-bd 1258 1391
IPR012592 PROCN 443 848
IPR012591 PRO8NT 102 253
IPR019580 Prp8_U6-snRNA-bd 1490 1648
IPR021983 PRP8_domainIV 1808 2037
IPR012984 PROCT 2260 2379
No external refs found!