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  5. Ppi_g09473

Ppi_g09473 (MBD05, MBD5, ATMBD5)


Aliases : MBD05, MBD5, ATMBD5

Description : methylation reader *(MBD5-6) & original description: none


Gene families : OG0000559 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000559_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g09473

Target Alias Description ECC score Gene Family Method Actions
Adi_g058770 ATMBD6, MBD6 methylation reader *(MBD5-6) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g11443 ATMBD6, MBD6 methylation reader *(MBD5-6) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene12193.t1 Aspi01Gene12193 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene15846.t1 Aspi01Gene15846 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene62285.t1 ATMBD6, MBD6,... methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g37743 ATMBD6, MBD6 methylation reader *(MBD5-6) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g09713 MBD05, MBD5, ATMBD5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25548 MBD05, MBD5, ATMBD5 methylation reader *(MBD5-6) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04554 MBD05, MBD5, ATMBD5 methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g13428 ATMBD6, MBD6 methylation reader *(MBD5-6) & original description: none 0.03 OrthoFinder output from all 47 species
Gb_12376 MBD05, MBD5, ATMBD5 methylation reader (MBD5-6) 0.02 OrthoFinder output from all 47 species
Lfl_g03371 MBD05, MBD5, ATMBD5 methylation reader *(MBD5-6) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0239.g026595 MBD05, MBD5, ATMBD5 methylation reader *(MBD5-6) & original description: CDS=121-1635 0.02 OrthoFinder output from all 47 species
Sam_g19246 No alias methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26548 No alias methylation reader *(MBD5-6) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50004 No alias methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g12365 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP HCCA
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001739 Methyl_CpG_DNA-bd 403 460
No external refs found!