1. Home
  2. Species
  3. Pyrrosia piloselloides
  4. Sequence
  5. Ppi_g08262

Ppi_g08262 (PAP(IV), nPAP)


Aliases : PAP(IV), nPAP

Description : poly(A) RNA polymerase & original description: none


Gene families : OG0000731 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000731_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g08262

Target Alias Description ECC score Gene Family Method Actions
AT1G17980 PAPS1 poly(A) polymerase 1 0.02 OrthoFinder output from all 47 species
Adi_g055927 PAPS1 poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g085047 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g102293 PAPS2 poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g18756 PAPS1 poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g06963 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0102.g044509 PAP(IV), nPAP poly(A) RNA polymerase & original description: CDS=1-2214 0.03 OrthoFinder output from all 47 species
Azfi_s1970.g108402 PAPS2 poly(A) RNA polymerase & original description: CDS=1131-1580 0.03 OrthoFinder output from all 47 species
Ceric.22G023600.1 PAP(IV), nPAP,... poly(A) RNA polymerase & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000037.23 PAPS1 RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase 0.01 OrthoFinder output from all 47 species
Dac_g33897 PAPS1 poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g13917 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g01604 PAPS1 poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008352001 PAPS1 RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase 0.02 OrthoFinder output from all 47 species
Gb_12958 PAPS1 poly(A) RNA polymerase 0.03 OrthoFinder output from all 47 species
Len_g14535 PAPS1 poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g10052 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g15635 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
MA_100058g0010 PAP(IV), nPAP poly(A) RNA polymerase 0.04 OrthoFinder output from all 47 species
Mp7g10140.1 PAPS1 poly(A) RNA polymerase 0.03 OrthoFinder output from all 47 species
Nbi_g08642 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g08646 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g17949 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc08g066200.3.1 PAP(IV), nPAP,... poly(A) RNA polymerase 0.02 OrthoFinder output from all 47 species
Spa_g22121 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g53559 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e030659_P006 PAP(IV), nPAP,... poly(A) RNA polymerase 0.02 OrthoFinder output from all 47 species
Zm00001e037202_P005 PAP(IV), nPAP,... poly(A) RNA polymerase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016779 nucleotidyltransferase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR007010 PolA_pol_RNA-bd_dom 415 488
IPR007010 PolA_pol_RNA-bd_dom 356 415
IPR007012 PolA_pol_cen_dom 9 352
IPR002934 Polymerase_NTP_transf_dom 79 163
No external refs found!