Ppi_g08246 (MSH7, ATMSH7, MSH6-2)

Aliases : MSH7, ATMSH7, MSH6-2

Description : component *(MSH7) of MSH2-x mismatch repair heterodimers & original description: none

Gene families : OG0001663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001663_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ppi_g08246

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00029910	MSH6-1, ATMSH6,...	DNA damage response.DNA repair mechanisms.mismatch...	0.02	OrthoFinder output from all 47 species
AT4G02070	MSH6-1, ATMSH6, MSH6	MUTS homolog 6	0.02	OrthoFinder output from all 47 species
Als_g23299	MSH7, ATMSH7, MSH6-2	component *(MSH7) of MSH2-x mismatch repair heterodimers...	0.03	OrthoFinder output from all 47 species
Aob_g14041	MSH6-1, ATMSH6, MSH6	component *(MSH6) of MSH2-x mismatch repair heterodimers...	0.02	OrthoFinder output from all 47 species
Aop_g09030	MSH6-1, ATMSH6, MSH6	component *(MSH6) of MSH2-x mismatch repair heterodimers...	0.02	OrthoFinder output from all 47 species
Aspi01Gene13168.t1	MSH7, ATMSH7,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g02113	MSH6-1, ATMSH6, MSH6	component *(MSH6) of MSH2-x mismatch repair heterodimers...	0.02	OrthoFinder output from all 47 species
Ceric.09G018600.1	MSH6-1, ATMSH6,...	component *(MSH6) of MSH2-x mismatch repair heterodimers...	0.04	OrthoFinder output from all 47 species
Cre05.g235750	MSH6-1, ATMSH6, MSH6	DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Dde_g22945	MSH6-1, ATMSH6, MSH6	component *(MSH6) of MSH2-x mismatch repair heterodimers...	0.03	OrthoFinder output from all 47 species
Ehy_g14545	MSH6-1, ATMSH6, MSH6	component *(MSH6) of MSH2-x mismatch repair heterodimers...	0.04	OrthoFinder output from all 47 species
Gb_07613	MSH6-1, ATMSH6, MSH6	component MSH6 of MSH2-x mismatch repair heterodimers	0.03	OrthoFinder output from all 47 species
LOC_Os09g24220.1	MSH6-1, ATMSH6,...	component MSH6 of MSH2-x mismatch repair heterodimers	0.02	OrthoFinder output from all 47 species
Lfl_g02400	MSH6-1, ATMSH6, MSH6	component *(MSH6) of MSH2-x mismatch repair heterodimers...	0.02	OrthoFinder output from all 47 species
MA_10429110g0010	MSH6-1, ATMSH6, MSH6	component MSH6 of MSH2-x mismatch repair heterodimers	0.03	OrthoFinder output from all 47 species
MA_214705g0010	MSH7, ATMSH7, MSH6-2	DNA mismatch repair protein MSH7 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Mp2g14640.1	MSH6-1, ATMSH6, MSH6	component MSH6 of MSH2-x mismatch repair heterodimers	0.03	OrthoFinder output from all 47 species
Msp_g15076	MSH6-1, ATMSH6, MSH6	component *(MSH6) of MSH2-x mismatch repair heterodimers...	0.03	OrthoFinder output from all 47 species
Pir_g66010	MSH6-1, ATMSH6, MSH6	component *(MSH6) of MSH2-x mismatch repair heterodimers...	0.03	OrthoFinder output from all 47 species
Smo125776	MSH7, ATMSH7, MSH6-2	DNA damage response.DNA repair mechanisms.mismatch...	0.02	OrthoFinder output from all 47 species
Solyc01g079520.3.1	MSH6-1, ATMSH6,...	component MSH6 of MSH2-x mismatch repair heterodimers	0.02	OrthoFinder output from all 47 species
Zm00001e034087_P001	MSH6-1, ATMSH6,...	component MSH6 of MSH2-x mismatch repair heterodimers	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030983	mismatched DNA binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004672	protein kinase activity	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000432	DNA_mismatch_repair_MutS_C	928	1133
IPR007695	DNA_mismatch_repair_MutS-lik_N	334	446
IPR007696	DNA_mismatch_repair_MutS_core	638	862
IPR007860	DNA_mmatch_repair_MutS_con_dom	472	615

External Links

No external refs found!

Ppi_g08246 (MSH7, ATMSH7, MSH6-2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation