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  5. Ppi_g06023

Ppi_g06023


Description : not classified & original description: none


Gene families : OG0001065 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001065_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g06023

Target Alias Description ECC score Gene Family Method Actions
Adi_g116113 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g58498 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene10208.t1 Aspi01Gene10208 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene30438.t1 Aspi01Gene30438 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g05728 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os02g58570.1 LOC_Os02g58570 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g11979 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA

No InterPro domains available for this sequence

No external refs found!