Ppi_g05930

Description : component *(NOT3) of mRNA deadenylation CCR4-NOT complex & original description: none

Gene families : OG0003951 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003951_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ppi_g05930

Target	Alias	Description	ECC score	Gene Family Method
Aev_g14080	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Ala_g02487	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Ceric.09G054000.1	Ceric.09G054000	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Dcu_g13304	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.03	OrthoFinder output from all 47 species
Lfl_g02194	No alias	component *(NOT3) of mRNA deadenylation CCR4-NOT complex...	0.02	OrthoFinder output from all 47 species
Mp1g08720.1	No alias	component NOT3/5 of mRNA deadenylation CCR4-NOT complex	0.02	OrthoFinder output from all 47 species
Mp5g06180.1	No alias	component NOT3/5 of mRNA deadenylation CCR4-NOT complex	0.02	OrthoFinder output from all 47 species
Zm00001e005243_P002	Zm00001e005243	component NOT3/5 of mRNA deadenylation CCR4-NOT complex	0.02	OrthoFinder output from all 47 species
Zm00001e012376_P003	Zm00001e012376	component NOT3/5 of mRNA deadenylation CCR4-NOT complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007207	Not_N	4	228
IPR007282	NOT2/3/5_C	743	875

External Links

No external refs found!