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  5. Ppi_g05350

Ppi_g05350 (CTS, ACN2, PED3, AtABCD1, PXA1)


Aliases : CTS, ACN2, PED3, AtABCD1, PXA1

Description : subfamily ABCD transporter & original description: none


Gene families : OG0003180 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003180_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g05350
Cluster HCCA: Cluster_274

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00194040 CTS, ACN2, PED3,... Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
AT4G39850 CTS, ACN2, PED3,... peroxisomal ABC transporter 1 0.02 OrthoFinder output from all 47 species
Adi_g020091 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g03612 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G050100.1 CTS, ACN2, PED3,... subfamily ABCD transporter & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g08997 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: none 0.02 OrthoFinder output from all 47 species
Len_g16771 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g02451 CTS, ACN2, PED3,... subfamily ABCD transporter & original description: none 0.03 OrthoFinder output from all 47 species
MA_10437109g0030 CTS, ACN2, PED3,... subfamily ABCD transporter 0.03 OrthoFinder output from all 47 species
Mp6g16850.1 CTS, ACN2, PED3,... peroxisomal fatty acid transporter (PXA1). subfamily... 0.02 OrthoFinder output from all 47 species
Sam_g36184 No alias subfamily ABCD transporter & original description: none 0.02 OrthoFinder output from all 47 species
Smo439220 CTS, ACN2, PED3,... Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005337 nucleoside transmembrane transporter activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0015858 nucleoside transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP HCCA
CC GO:0031011 Ino80 complex IEP HCCA
CC GO:0070603 SWI/SNF superfamily-type complex IEP HCCA
CC GO:0097346 INO80-type complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901264 carbohydrate derivative transport IEP HCCA
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP HCCA
BP GO:1901642 nucleoside transmembrane transport IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 84 352
IPR011527 ABC1_TM_dom 738 1004
IPR003439 ABC_transporter-like_ATP-bd 1110 1276
IPR003439 ABC_transporter-like_ATP-bd 457 602
No external refs found!