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  5. Ppi_g05341

Ppi_g05341 (EMB3011)


Aliases : EMB3011

Description : RNA helicase *(Prp16) & original description: none


Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g05341

Target Alias Description ECC score Gene Family Method Actions
AT1G32490 ESP3, EMB2733 RNA helicase family protein 0.02 OrthoFinder output from all 47 species
AT2G35340 MEE29 helicase domain-containing protein 0.02 OrthoFinder output from all 47 species
AT3G26560 No alias ATP-dependent RNA helicase, putative 0.03 OrthoFinder output from all 47 species
Adi_g060167 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g11422 No alias RNA helicase *(Prp22) & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g14240 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02597 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g37436 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g38553 EMB3011 RNA helicase *(Prp16) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g01897 No alias RNA helicase *(Prp22) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g29988 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g13922 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g64809 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene30671.t1 Aspi01Gene30671 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g23753 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.15G036900.1 Ceric.15G036900 RNA helicase *(Prp22) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.37G064800.1 ESP3, EMB2733,... RNA helicase *(Prp2) & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000842.2 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000984.27 ESP3, EMB2733 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.01 OrthoFinder output from all 47 species
Cre07.g349100 ESP3, EMB2733 RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder output from all 47 species
Dac_g30923 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g03121 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01007911001 ESP3, EMB2733 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.06 OrthoFinder output from all 47 species
GSVIVT01029863001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 OrthoFinder output from all 47 species
Gb_13411 EMB3011 RNA helicase (Prp16) 0.03 OrthoFinder output from all 47 species
Gb_14270 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 OrthoFinder output from all 47 species
LOC_Os02g19860.1 LOC_Os02g19860 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
LOC_Os08g24760.1 ESP3, EMB2733,... RNA helicase (Prp2) 0.02 OrthoFinder output from all 47 species
Len_g01369 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g09738 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g13066 EMB3011 RNA helicase *(Prp16) & original description: none 0.02 OrthoFinder output from all 47 species
MA_10217744g0010 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.02 OrthoFinder output from all 47 species
MA_4084g0010 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp4g16380.1 ESP3, EMB2733 RNA helicase (Prp2) 0.01 OrthoFinder output from all 47 species
Mp7g03460.1 EMB3011 RNA helicase (Prp16) 0.02 OrthoFinder output from all 47 species
Msp_g13247 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g03086 No alias RNA helicase *(Prp22) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07572 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g21732 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g18506 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g25079 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g48742 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.02 OrthoFinder output from all 47 species
Smo76120 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Solyc10g076910.2.1 EMB3011, Solyc10g076910 RNA helicase (Prp16) 0.02 OrthoFinder output from all 47 species
Spa_g12381 No alias RNA helicase *(Prp22) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22116 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g25913 EMB3011 RNA helicase *(Prp16) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e001487_P003 Zm00001e001487 helicase Prp43 of Intron-Lariat Spliceosome complex 0.03 OrthoFinder output from all 47 species
Zm00001e014112_P001 Zm00001e014112 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Zm00001e022095_P001 ESP3, EMB2733,... RNA helicase (Prp2) 0.02 OrthoFinder output from all 47 species
Zm00001e028404_P001 Zm00001e028404 RNA helicase (Prp22) 0.02 OrthoFinder output from all 47 species
Zm00001e038305_P001 Zm00001e038305 helicase Prp43 of Intron-Lariat Spliceosome complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 570 723
IPR011709 DEAD-box_helicase_OB_fold 1106 1183
IPR001650 Helicase_C 773 898
IPR007502 Helicase-assoc_dom 961 1047
No external refs found!