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  5. Ppi_g05287

Ppi_g05287 (CAF2, ATCAF2)


Aliases : CAF2, ATCAF2

Description : component *(CAF) of CRS2-CAF plastidial RNA splicing factor complexes & original description: none


Gene families : OG0001061 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001061_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g05287

Target Alias Description ECC score Gene Family Method Actions
AT2G20020 ATCAF1, CAF1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.03 OrthoFinder output from all 47 species
Als_g16109 ATCAF1, CAF1 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.02 OrthoFinder output from all 47 species
Als_g63274 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.02 OrthoFinder output from all 47 species
Cba_g06914 CAF2, ATCAF2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g12900 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.02 OrthoFinder output from all 47 species
Cba_g72184 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 OrthoFinder output from all 47 species
Ceric.14G027700.1 Ceric.14G027700 not classified & original description: pacid=50634377... 0.02 OrthoFinder output from all 47 species
Ceric.17G046000.1 ATCAF1, CAF1,... not classified & original description: pacid=50617225... 0.03 OrthoFinder output from all 47 species
Dde_g14923 ATCAF1, CAF1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02479 ATCAF1, CAF1 mCSF mitochondrial RNA splicing factor & original... 0.02 OrthoFinder output from all 47 species
Ehy_g19169 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os08g07790.1 LOC_Os08g07790 mCSF mitochondrial RNA splicing factor 0.02 OrthoFinder output from all 47 species
Msp_g13314 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 OrthoFinder output from all 47 species
Nbi_g08909 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.02 OrthoFinder output from all 47 species
Ore_g02160 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc05g018240.4.1 ATCAF1, CAF1,... component CAF of CRS2-CAF plastidial RNA splicing factor... 0.04 OrthoFinder output from all 47 species
Solyc11g066300.3.1 CAF2, ATCAF2,... component CAF of CRS2-CAF plastidial RNA splicing factor... 0.02 OrthoFinder output from all 47 species
Spa_g51985 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 OrthoFinder output from all 47 species
Tin_g12704 ATCAF1, CAF1 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0060590 ATPase regulator activity IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 254 335
IPR001890 RNA-binding_CRM 370 453
No external refs found!