Aliases : CAF2, ATCAF2
Description : component *(CAF) of CRS2-CAF plastidial RNA splicing factor complexes & original description: none
Gene families : OG0001061 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001061_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT2G20020 | ATCAF1, CAF1 | RNA-binding CRS1 / YhbY (CRM) domain-containing protein | 0.03 | OrthoFinder output from all 47 species | |
Als_g16109 | ATCAF1, CAF1 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.02 | OrthoFinder output from all 47 species | |
Als_g63274 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.02 | OrthoFinder output from all 47 species | |
Cba_g06914 | CAF2, ATCAF2 | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
Cba_g12900 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.02 | OrthoFinder output from all 47 species | |
Cba_g72184 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.14G027700.1 | Ceric.14G027700 | not classified & original description: pacid=50634377... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.17G046000.1 | ATCAF1, CAF1,... | not classified & original description: pacid=50617225... | 0.03 | OrthoFinder output from all 47 species | |
Dde_g14923 | ATCAF1, CAF1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g02479 | ATCAF1, CAF1 | mCSF mitochondrial RNA splicing factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g19169 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os08g07790.1 | LOC_Os08g07790 | mCSF mitochondrial RNA splicing factor | 0.02 | OrthoFinder output from all 47 species | |
Msp_g13314 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species | |
Nbi_g08909 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.02 | OrthoFinder output from all 47 species | |
Ore_g02160 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Solyc05g018240.4.1 | ATCAF1, CAF1,... | component CAF of CRS2-CAF plastidial RNA splicing factor... | 0.04 | OrthoFinder output from all 47 species | |
Solyc11g066300.3.1 | CAF2, ATCAF2,... | component CAF of CRS2-CAF plastidial RNA splicing factor... | 0.02 | OrthoFinder output from all 47 species | |
Spa_g51985 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g12704 | ATCAF1, CAF1 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
MF | GO:0000774 | adenyl-nucleotide exchange factor activity | IEP | HCCA |
CC | GO:0005759 | mitochondrial matrix | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006364 | rRNA processing | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
CC | GO:0031974 | membrane-enclosed lumen | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
MF | GO:0042802 | identical protein binding | IEP | HCCA |
MF | GO:0042803 | protein homodimerization activity | IEP | HCCA |
CC | GO:0043233 | organelle lumen | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
MF | GO:0051087 | chaperone binding | IEP | HCCA |
MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
MF | GO:0051540 | metal cluster binding | IEP | HCCA |
MF | GO:0060590 | ATPase regulator activity | IEP | HCCA |
CC | GO:0070013 | intracellular organelle lumen | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
No external refs found! |