Ppi_g04716 (CHR5)

Aliases : CHR5

Description : component *(CHR5) of SAGA transcription co-activator complex & original description: none

Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ppi_g04716

Target	Alias	Description	ECC score	Gene Family Method
AT2G13370	CHR5	chromatin remodeling 5	0.02	OrthoFinder output from all 47 species
Adi_g004816	SYD, CHR3	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g011955	SYD, CHR3	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g41954	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.04	OrthoFinder output from all 47 species
Als_g01971	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g06101	No alias	chromatin remodeling factor *(ALC1) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g13607	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Aspi01Gene14150.t1	CHR11, Aspi01Gene14150	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene14150.t2	CHR11, Aspi01Gene14150	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene24030.t1	CHR5, Aspi01Gene24030	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Aspi01Gene47130.t1	SYD, CHR3,...	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene47132.t1	SYD, CHR3,...	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Aspi01Gene52538.t1	PKL, GYM, CHR6,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene62384.t3	PKR1, CHR4,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.08	OrthoFinder output from all 47 species
Aspi01Gene66096.t1	CHR11, Aspi01Gene66096	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.02	OrthoFinder output from all 47 species
Aspi01Gene70267.t2	Aspi01Gene70267	chromatin remodeling factor *(ALC1) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g16449	CHR17	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.03	OrthoFinder output from all 47 species
Cba_g23143	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Cba_g33620	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Ceric.06G004000.1	Ceric.06G004000	chromatin remodeling factor *(ALC1) & original...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000545.10	ATCHR12	Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000983.26	CHR5	RNA biosynthesis.RNA polymerase II-dependent...	0.01	OrthoFinder output from all 47 species
Dac_g06908	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Dac_g13958	CHR5	component *(CHR5) of SAGA transcription co-activator...	0.03	OrthoFinder output from all 47 species
Dcu_g38948	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g03505	PKL, GYM, CHR6,...	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Dde_g10991	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
GSVIVT01017820001	SYD, CHR3	Chromatin organisation.chromatin remodeling...	0.02	OrthoFinder output from all 47 species
GSVIVT01018218001	No alias	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Mp5g06580.2	SYD, CHR3	chromatin remodeling factor (Snf2)	0.02	OrthoFinder output from all 47 species
Msp_g13222	ATCHR12	SMARCA component *(SYD/BRM/MINU) & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g15707	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Nbi_g12189	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Ore_g18803	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Ore_g36640	PKL, GYM, CHR6,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g52065	PKL, GYM, CHR6,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002414	PKR1, CHR4	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008525	CHR11	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018707	SYD, CHR3	SMARCA component *(SYD/BRM/MINU) & original description:...	0.02	OrthoFinder output from all 47 species
Sam_g22507	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g27629	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g29292	No alias	CHD3-type chromatin remodeling factor *(PKL/PKR) &...	0.02	OrthoFinder output from all 47 species
Solyc08g029130.3.1	PKL, GYM, CHR6,...	chromatin remodeling factor (Chd3/Mi-2)	0.02	OrthoFinder output from all 47 species
Spa_g24876	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g36192	CHR11	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g28925	PKR1, CHR4	CHD3-type chromaTin remodeling factor *(PKL/PKR) &...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEA	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	931	1044
IPR025260	CHD1-like_C	1546	1639
IPR023780	Chromo_domain	523	577
IPR000330	SNF2_N	633	902

External Links

No external refs found!

Ppi_g04716 (CHR5)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation