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  5. Ppi_g04550

Ppi_g04550 (AtTLP3, TLP3)


Aliases : AtTLP3, TLP3

Description : TUB-type transcription factor & original description: none


Gene families : OG0000251 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000251_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g04550

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00153680 AtTLP3, TLP3,... RNA biosynthesis.transcriptional activation.TUB... 0.02 OrthoFinder output from all 47 species
AT1G61940 AtTLP4, TLP4 tubby like protein 4 0.03 OrthoFinder output from all 47 species
Adi_g115192 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G045700.1 AtTLP3, TLP3,... TUB-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
LOC_Os05g36190.1 TLP10, AtTLP10,... transcription factor (TUB) 0.02 OrthoFinder output from all 47 species
Len_g24109 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g27494 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g31683 AtTLP1, TLP1 TUB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Smo83983 AtTLP3, TLP3 RNA biosynthesis.transcriptional activation.TUB... 0.02 OrthoFinder output from all 47 species
Solyc10g046970.2.1 TLP10, AtTLP10,... transcription factor (TUB) 0.04 OrthoFinder output from all 47 species
Zm00001e001672_P001 AtTLP3, TLP3,... transcription factor (TUB) 0.02 OrthoFinder output from all 47 species
Zm00001e039448_P004 TLP10, AtTLP10,... transcription factor (TUB) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0007165 signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR001810 F-box_dom 60 106
IPR000007 Tubby_C 121 421
No external refs found!