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  5. Ppi_g04455

Ppi_g04455 (RACK1C_AT)


Aliases : RACK1C_AT

Description : component *(RACK1) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0002231 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002231_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ppi_g04455
Cluster HCCA: Cluster_280

Target Alias Description ECC score Gene Family Method Actions
AT1G48630 RACK1B_AT receptor for activated C kinase 1B 0.02 OrthoFinder output from all 47 species
Als_g08944 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Als_g59033 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aop_g00477 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
LOC_Os01g49290.1 RACK1C_AT, LOC_Os01g49290 associated component RACK1 of SSU proteome 0.03 OrthoFinder output from all 47 species
Mp3g15630.1 RACK1C_AT associated component RACK1 of SSU proteome 0.02 OrthoFinder output from all 47 species
Smo266532 RACK1C_AT Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Solyc03g119040.3.1 RACK1B_AT, Solyc03g119040 associated component RACK1 of SSU proteome 0.03 OrthoFinder output from all 47 species
Spa_g16013 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Spa_g25399 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Tin_g04974 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Tin_g45000 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Zm00001e026456_P001 RACK1C_AT, Zm00001e026456 associated component RACK1 of SSU proteome 0.03 OrthoFinder output from all 47 species
Zm00001e032340_P001 RACK1C_AT, Zm00001e032340 associated component RACK1 of SSU proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005750 mitochondrial respiratory chain complex III IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009060 aerobic respiration IEP HCCA
BP GO:0015980 energy derivation by oxidation of organic compounds IEP HCCA
BP GO:0019646 aerobic electron transport chain IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0022904 respiratory electron transport chain IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
CC GO:0045275 respiratory chain complex III IEP HCCA
BP GO:0045333 cellular respiration IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
CC GO:0098803 respiratory chain complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1902495 transmembrane transporter complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
CC GO:1990351 transporter complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 57 90
IPR001680 WD40_repeat 145 178
IPR001680 WD40_repeat 234 260
IPR001680 WD40_repeat 285 310
IPR001680 WD40_repeat 186 220
IPR001680 WD40_repeat 9 44
IPR001680 WD40_repeat 96 132
No external refs found!